Os05g0207200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os05g0207200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.4 | 0.613 | 5.49 | 1.74 | 3.33 | -1.47 | 1.38 | 0.442 | 0.106 | 19.4 | 29.66 | 302 | -- | -- |
| 170.71 | 0.609 | 5.49 | 1.74 | 3.33 | -1.47 | 1.36 | -- | 0.107 | 19.4 | 29.67 | 307 | -- | -- |
| 175.54 | 0.617 | 5.49 | 1.7 | 3.32 | -1.48 | -- | 0.433 | 0.107 | 19.4 | 29.66 | 311 | -- | -- |
| 175.75 | 0.617 | 5.49 | 1.71 | 3.31 | -1.5 | -- | -- | 0.102 | 19.4 | 29.67 | 311 | -- | -- |
| 282.85 | 0.783 | 5.47 | 1.91 | -- | -4.43 | -- | 3.4 | 0.114 | -- | 2.03 | 835 | -- | -- |
| 205.39 | 0.672 | 5.47 | 1.78 | 3.68 | -- | 1.45 | -- | 0.208 | 18.8 | -- | -- | -- | -- |
| 210.72 | 0.68 | 5.47 | 1.75 | 3.68 | -- | -- | -- | 0.212 | 18.8 | -- | -- | -- | -- |
| 236.53 | 0.716 | 5.41 | 1.53 | -- | -4.9 | -- | -- | 0.0754 | -- | 1.82 | 845 | -- | -- |
| 241.74 | 0.724 | 5.54 | -- | 3.03 | -1.79 | -- | -- | -0.139 | 19.5 | 30.01 | 401 | -- | -- |
| 919.66 | 1.42 | 5.39 | 1.67 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 291.87 | 0.799 | 5.51 | -- | 3.66 | -- | -- | -- | 0.0167 | 18.8 | -- | -- | -- | -- |
| 288.49 | 0.791 | 5.46 | -- | -- | -4.98 | -- | -- | -0.178 | -- | 0.69 | 864 | -- | -- |
| 993.37 | 1.47 | 5.44 | -- | -- | -- | -- | -- | -0.0454 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.48 | radiation | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
| 2 | 170.15 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 3 | 170.50 | radiation | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 7 | 171.12 | radiation | 30 | 720 | < th | dose independent | rect. | 15 | 20 |
| 9 | 171.31 | radiation | 30 | 720 | < th | dose independent | rect. | 5 | 6 |
| 15 | 171.94 | radiation | 30 | 720 | < th | dose independent | rect. | 21 | 14 |
| 20 | 172.02 | radiation | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 21 | 172.05 | radiation | 30 | 720 | > th | dose independent | rect. | 8 | 2 |
| 22 | 172.10 | radiation | 30 | 270 | < th | dose independent | no | NA | NA |
| 24 | 172.14 | radiation | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 29 | 172.29 | radiation | 30 | 270 | < th | dose independent | rect. | 5 | 12 |
| 30 | 172.33 | radiation | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 31 | 172.43 | radiation | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 33 | 172.56 | radiation | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 37 | 172.67 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 46 | 172.93 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 98 | 173.45 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
| 99 | 173.49 | radiation | 30 | 270 | > th | dose independent | sin | 2 | NA |
| 102 | 173.59 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 106 | 173.70 | radiation | 30 | 270 | > th | dose independent | rect. | 8 | 8 |
| 144 | 173.86 | radiation | 30 | 270 | > th | dose independent | no | NA | NA |
| 283 | 173.96 | radiation | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 321 | 174.18 | radiation | 10 | 270 | > th | dose dependent | no | NA | NA |
| 414 | 174.24 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 423 | 174.38 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 442 | 174.49 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 445 | 174.53 | humidity | 70 | 90 | > th | dose independent | rect. | 7 | 15 |
| 570 | 174.86 | radiation | 30 | 90 | < th | dose independent | rect. | 7 | 20 |
| 739 | 175.14 | radiation | 30 | 90 | < th | dose independent | rect. | 7 | 16 |
| 937 | 175.71 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |