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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0206000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0342) R2 : 0.175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.44 (0.457) R2dE : 0.171 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.13 (0.072) R2dN8 : 0.00758 R2N8 : 0.00348
σ : 0.642
deviance : 190.28
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 92.87
memory length : 104
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.7
open length of G : 0.0202

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.71 0.642 3.02 0.0171 0.137 4.62 0.784 -3.02 0.134 5.48 93.22 134 20.6 0.45
187.59 0.638 3.02 0.0128 0.137 4.47 0.811 -- 0.132 5.62 93.25 133 20.7 0.367
188.17 0.639 3.02 0.0219 0.144 4.63 -- -3.1 0.131 6.14 93.13 129 20.6 0.433
189.19 0.641 3.02 0.0191 0.145 4.48 -- -- 0.129 6.13 93.2 146 20.7 0.38
189.25 0.641 3.02 0.0258 -- 4.58 -- -3.12 0.134 -- 93.14 130 20.6 0.429
227.42 0.707 3.03 0.00644 0.105 -- 0.801 -- 0.105 5.11 -- -- -- --
228.94 0.709 3.03 0.00497 0.115 -- -- -- 0.101 3.75 -- -- -- --
190.27 0.642 3.02 0.0234 -- 4.44 -- -- 0.132 -- 92.87 105 20.7 0.0216
189.2 0.641 3.02 -- 0.145 4.48 -- -- 0.127 6.13 93.2 145 20.7 0.377
229.68 0.708 3.03 0.00976 -- -- -- -- 0.104 -- -- -- -- --
228.94 0.708 3.03 -- 0.115 -- -- -- 0.101 3.75 -- -- -- --
190.28 0.642 3.02 -- -- 4.44 -- -- 0.13 -- 92.87 104 20.7 0.0202
229.68 0.707 3.03 -- -- -- -- -- 0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.82 humidity 90.0 90 > th dose dependent rect. 20 1
2 204.74 wind 7.0 90 > th dose dependent rect. 23 2
3 205.58 wind 7.0 90 > th dose independent rect. 22 1
8 205.64 wind 9.0 1440 > th dose independent rect. 22 4
16 205.64 wind 9.0 1440 > th dose dependent rect. 22 4
24 205.66 wind 9.0 1440 > th dose independent rect. 22 1
28 205.66 wind 9.0 1440 > th dose dependent rect. 22 1
32 205.75 wind 9.0 90 > th dose independent rect. 22 12
135 212.90 temperature 25.0 90 > th dose dependent rect. 3 1
138 213.09 precipitation 0.1 90 > th dose independent rect. 21 2
140 213.09 precipitation 0.1 90 > th dose dependent rect. 21 2
164 213.30 atmosphere 1000.0 10 < th dose independent rect. 3 1
171 213.30 atmosphere 1000.0 10 < th dose dependent rect. 3 1
210 213.43 temperature 25.0 10 > th dose independent rect. 3 1
224 213.72 atmosphere 1005.0 90 < th dose independent rect. 20 1
343 215.11 humidity 90.0 90 > th dose independent rect. 21 1
375 215.34 humidity 90.0 10 > th dose independent rect. 21 2
413 215.58 wind 5.0 270 > th dose dependent rect. 20 4
510 217.51 temperature 25.0 30 > th dose independent rect. 21 1
571 218.02 atmosphere 1000.0 270 < th dose independent rect. 24 4
574 218.04 atmosphere 1000.0 270 < th dose dependent rect. 24 4
684 218.92 humidity 80.0 90 < th dose independent rect. 22 1
686 218.94 precipitation 0.1 270 > th dose dependent rect. 17 2
691 218.98 precipitation 0.1 270 > th dose independent rect. 17 2
712 219.13 wind 1.0 270 < th dose dependent rect. 18 2
713 219.15 wind 1.0 270 < th dose independent rect. 18 2
725 219.23 humidity 90.0 1440 > th dose dependent rect. 20 1
752 219.49 precipitation 0.1 270 > th dose dependent rect. 18 5
766 219.54 humidity 80.0 720 > th dose independent rect. 22 3
769 219.56 precipitation 0.1 270 > th dose independent rect. 18 5
797 219.67 precipitation 0.1 270 > th dose dependent rect. 18 9
811 219.74 humidity 80.0 90 < th dose dependent rect. 22 1
860 220.03 precipitation 0.1 270 > th dose independent rect. 18 9
869 220.07 wind 5.0 720 < th dose independent rect. 17 8
902 220.22 wind 7.0 720 < th dose independent rect. 15 10
926 220.33 radiation 40.0 10 < th dose independent rect. 22 22
937 220.37 temperature 25.0 30 > th dose independent rect. 21 9
980 220.55 wind 9.0 720 < th dose dependent rect. 22 3
982 220.56 wind 5.0 720 < th dose independent rect. 22 3
990 220.58 radiation 1.0 720 < th dose dependent rect. 11 11
1000 220.62 precipitation 0.1 270 > th dose dependent rect. 13 7