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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0205000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NOD26-like membrane integral protein ZmNIP1-1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.7 (0.0278) R2 : 0.307
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.723 (0.0527) R2dE : 0.283 R2E : 0.283
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.208 (0.0586) R2dN8 : 0.0242 R2N8 : 0.0244
σ : 0.523
deviance : 126.05
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 10.07
memory length : 9
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.75 0.521 9.72 -0.315 0.0408 0.742 -1.46 -1.24 0.132 10.6 9.316 10 -- --
125.14 0.521 9.7 -0.271 0.00538 0.694 -0.414 -- 0.156 7.11 9.379 9 -- --
125.12 0.521 9.71 -0.292 0.0294 0.726 -- -0.219 0.149 10.6 9.38 9 -- --
125.13 0.521 9.71 -0.271 0.118 0.769 -- -- 0.152 14.1 9.3 9 -- --
125.13 0.521 9.72 -0.291 -- 0.714 -- -0.219 0.149 -- 9.38 9 -- --
143.46 0.562 9.71 -0.218 0.724 -- 0.0904 -- 0.206 23.8 -- -- -- --
143.49 0.561 9.71 -0.222 0.723 -- -- -- 0.206 23.8 -- -- -- --
125.45 0.522 9.71 -0.271 -- 0.711 -- -- 0.152 -- 9.379 9 -- --
126.16 0.523 9.7 -- 0.15 0.795 -- -- 0.212 14.9 10.36 10 -- --
176.4 0.621 9.7 -0.201 -- -- -- -- 0.215 -- -- -- -- --
144.8 0.563 9.71 -- 0.72 -- -- -- 0.23 23.8 -- -- -- --
126.05 0.523 9.7 -- -- 0.723 -- -- 0.208 -- 10.07 9 -- --
177.47 0.622 9.69 -- -- -- -- -- 0.237 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.54 radiation 20 10 < th dose dependent rect. 23 23
2 115.80 radiation 10 10 < th dose independent rect. 23 23
4 116.35 temperature 20 270 > th dose independent rect. 23 9
9 116.99 temperature 15 270 > th dose dependent rect. 23 9
13 117.99 temperature 20 270 > th dose independent rect. 1 6
20 118.84 radiation 20 90 < th dose dependent rect. 5 14
22 119.05 temperature 20 270 > th dose independent rect. 13 18
28 119.72 radiation 20 90 < th dose dependent sin 1 NA
31 119.83 radiation 10 90 < th dose independent rect. 5 14
41 120.72 radiation 10 10 > th dose independent rect. 9 23
44 120.77 radiation 10 90 < th dose independent sin 1 NA
45 120.79 radiation 10 10 < th dose independent sin 0 NA
47 120.84 radiation 20 10 < th dose dependent sin 23 NA
53 120.96 radiation 10 10 < th dose independent rect. 6 14
55 120.97 radiation 40 90 < th dose dependent rect. 13 20
57 120.99 radiation 20 90 < th dose independent rect. 13 20
60 121.03 radiation 20 10 < th dose dependent rect. 6 14
65 121.14 radiation 20 90 < th dose independent rect. 11 23
77 121.43 temperature 20 270 > th dose independent rect. 3 15
94 121.64 radiation 10 90 > th dose independent rect. 9 7
103 121.81 radiation 40 10 < th dose dependent rect. 12 21
108 121.87 temperature 20 720 > th dose independent rect. 19 12
114 121.96 radiation 10 10 > th dose independent rect. 9 9
142 121.99 humidity 80 10 < th dose independent rect. 23 17
144 122.00 humidity 80 90 < th dose independent rect. 22 18
149 122.10 radiation 10 10 > th dose independent rect. 9 7
210 122.55 temperature 20 720 > th dose independent sin 11 NA
219 122.61 radiation 10 10 > th dose independent sin 23 NA
227 122.67 radiation 10 90 > th dose independent sin 0 NA
251 122.84 humidity 90 30 < th dose dependent rect. 22 18
259 122.90 humidity 80 10 < th dose independent rect. 9 7
312 123.30 temperature 10 720 > th dose dependent rect. 19 14
314 123.31 radiation 10 10 < th dose independent rect. 13 23
327 123.37 humidity 90 30 < th dose dependent rect. 20 20
331 123.41 temperature 20 10 > th dose dependent rect. 1 8
342 123.49 radiation 10 10 < th dose independent rect. 15 23
356 123.57 radiation 10 10 < th dose independent no NA NA
377 123.63 radiation 10 10 < th dose independent rect. 9 23
385 123.66 temperature 20 10 > th dose independent rect. 1 8
388 123.67 temperature 20 720 < th dose independent rect. 18 13
418 123.79 temperature 25 720 < th dose dependent sin 11 NA
425 123.83 temperature 20 720 < th dose independent sin 11 NA
437 123.88 temperature 25 720 < th dose dependent rect. 21 8
464 123.98 temperature 25 720 < th dose dependent rect. 23 4
483 124.03 temperature 25 720 < th dose dependent rect. 18 13
499 124.06 temperature 25 720 < th dose dependent rect. 19 11
506 124.08 temperature 25 720 < th dose dependent rect. 18 15
558 124.18 wind 1 270 > th dose independent rect. 18 9
600 124.28 temperature 20 720 < th dose independent rect. 21 7
617 124.32 temperature 20 270 > th dose independent rect. 23 20
642 124.36 humidity 80 90 < th dose independent sin 3 NA
645 124.36 radiation 10 10 > th dose independent rect. 17 23
654 124.38 radiation 20 10 < th dose dependent no NA NA
683 124.42 temperature 15 720 > th dose dependent sin 10 NA
695 124.45 radiation 20 10 < th dose dependent rect. 15 23
710 124.51 radiation 20 90 < th dose independent rect. 15 18
763 124.67 humidity 80 90 > th dose independent rect. 4 14
790 124.76 humidity 80 270 > th dose independent rect. 23 9
803 124.81 radiation 10 10 > th dose independent no NA NA
936 124.89 humidity 80 10 < th dose independent sin 2 NA
939 124.89 humidity 50 30 > th dose dependent rect. 23 23
989 125.03 temperature 20 720 > th dose independent rect. 23 2
993 125.05 humidity 80 30 > th dose independent sin 2 NA