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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0203800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MADS box protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.9 (0.0445) R2 : 0.324
β1 : 2.1 (0.163) R2dD : 0.255 R2D : 0.281
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.441 (0.095) R2dN8 : 0.0429 R2N8 : 0.0683
σ : 0.835
deviance : 319.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.24 0.803 3.86 1.82 0.307 1.1 0.481 1.73 -0.347 1.36 0.1381 4560 -- --
294.6 0.799 3.88 1.91 0.316 1.19 0.513 -- -0.337 1.3 0.1911 4560 -- --
293.08 0.797 3.85 1.8 0.309 1.14 -- 1.75 -0.338 1.96 0.1464 4590 -- --
295.43 0.801 3.88 1.89 0.323 1.21 -- -- -0.34 2.04 0.2193 4561 -- --
298.95 0.805 3.85 1.81 -- 1.11 -- 1.86 -0.343 -- 0.09172 4560 -- --
311.64 0.828 3.9 2.11 0.311 -- 0.616 -- -0.445 1.38 -- -- -- --
313 0.828 3.9 2.08 0.32 -- -- -- -0.449 2.09 -- -- -- --
301.69 0.809 3.87 1.9 -- 1.2 -- -- -0.332 -- 0.2563 4568 -- --
379.21 0.907 3.92 -- 0.326 1.55 -- -- -0.535 2.59 0.7742 4516 -- --
319.13 0.835 3.9 2.1 -- -- -- -- -0.441 -- -- -- -- --
427.5 0.967 3.95 -- 0.359 -- -- -- -0.681 2.22 -- -- -- --
328.75 0.844 3.88 -- -- 1.43 -- -- -0.344 -- 1.202 47520 -- --
435.19 0.974 3.95 -- -- -- -- -- -0.674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.22 humidity 80.0 43200 < th dose independent rect. 3 5
8 289.19 humidity 80.0 43200 > th dose independent rect. 3 4
12 289.49 wind 3.0 14400 < th dose dependent rect. 2 2
16 289.66 radiation 10.0 1440 < th dose dependent rect. 17 15
17 289.66 radiation 10.0 1440 < th dose dependent rect. 16 17
19 289.68 precipitation 0.1 14400 > th dose dependent rect. 13 1
20 289.71 precipitation 0.1 14400 > th dose independent rect. 13 1
23 289.81 radiation 10.0 1440 < th dose dependent sin 11 NA
25 289.86 humidity 80.0 43200 > th dose independent rect. 3 1
33 290.01 precipitation 0.1 14400 < th dose independent rect. 13 1
35 290.01 precipitation 0.1 14400 < th dose dependent rect. 13 1
36 290.02 humidity 80.0 43200 < th dose independent rect. 3 1
39 290.09 wind 3.0 43200 < th dose dependent rect. 24 4
42 290.15 precipitation 0.1 43200 > th dose dependent rect. 19 1
51 290.36 radiation 10.0 1440 < th dose dependent rect. 6 2
69 290.55 humidity 80.0 43200 < th dose dependent rect. 22 11
73 290.59 humidity 80.0 43200 > th dose dependent rect. 18 6
80 290.66 humidity 80.0 43200 > th dose dependent rect. 17 8
88 290.73 humidity 80.0 43200 < th dose independent rect. 23 2
119 291.18 humidity 90.0 43200 < th dose independent rect. 21 4
121 291.19 radiation 10.0 1440 < th dose dependent rect. 1 7
125 291.21 radiation 10.0 1440 < th dose dependent rect. 4 4
131 291.23 radiation 10.0 1440 < th dose dependent rect. 21 11
139 291.33 precipitation 0.1 43200 > th dose independent rect. 19 1
140 291.34 humidity 80.0 43200 < th dose dependent rect. 22 1
144 291.39 precipitation 0.1 43200 < th dose independent rect. 19 1
145 291.39 precipitation 0.1 43200 < th dose dependent rect. 19 1
164 291.65 radiation 1.0 14400 < th dose dependent rect. 21 8
170 291.71 humidity 80.0 43200 > th dose dependent rect. 20 3
171 291.72 radiation 1.0 14400 < th dose dependent rect. 19 10
176 291.76 humidity 80.0 43200 < th dose dependent rect. 2 1
179 291.82 humidity 80.0 43200 > th dose dependent sin 16 NA
184 291.87 wind 1.0 43200 < th dose independent rect. 1 2
192 291.97 precipitation 0.1 4320 > th dose dependent rect. 22 19
207 292.08 wind 3.0 43200 < th dose independent rect. 6 4
208 292.08 humidity 90.0 43200 > th dose independent rect. 21 5
210 292.08 humidity 80.0 43200 < th dose dependent rect. 22 5
226 292.17 radiation 10.0 1440 < th dose dependent rect. 2 10
229 292.18 humidity 90.0 43200 < th dose independent rect. 17 14
230 292.18 radiation 10.0 1440 < th dose dependent rect. 4 8
232 292.19 wind 1.0 43200 > th dose independent rect. 16 1
236 292.19 radiation 10.0 1440 < th dose dependent rect. 21 15
247 292.24 humidity 90.0 43200 < th dose independent sin 13 NA
248 292.24 wind 1.0 43200 > th dose independent rect. 1 1
250 292.25 humidity 90.0 43200 > th dose independent rect. 19 12
254 292.27 radiation 10.0 1440 < th dose dependent rect. 6 6
263 292.30 humidity 90.0 43200 < th dose independent rect. 14 17
270 292.33 wind 3.0 43200 > th dose independent rect. 6 4
272 292.33 wind 3.0 43200 < th dose dependent rect. 8 1
303 292.42 wind 7.0 43200 < th dose dependent rect. 11 2
305 292.43 precipitation 0.1 4320 > th dose independent rect. 1 16
307 292.44 precipitation 0.1 4320 < th dose independent rect. 1 16
309 292.44 precipitation 0.1 4320 > th dose dependent rect. 8 9
310 292.44 precipitation 0.1 4320 < th dose dependent rect. 1 16
317 292.46 precipitation 0.1 4320 > th dose independent rect. 22 19
326 292.49 radiation 1.0 14400 < th dose dependent rect. 7 5
329 292.50 precipitation 0.1 4320 < th dose independent rect. 22 19
330 292.50 precipitation 0.1 4320 < th dose dependent rect. 22 19
347 292.55 precipitation 0.1 4320 > th dose dependent rect. 11 6
355 292.57 humidity 80.0 43200 > th dose dependent rect. 14 21
356 292.58 humidity 90.0 43200 > th dose independent rect. 14 16
391 292.64 humidity 90.0 43200 > th dose independent sin 12 NA
403 292.65 humidity 80.0 43200 > th dose dependent rect. 9 22
414 292.67 precipitation 0.1 4320 > th dose dependent rect. 6 11
430 292.71 wind 3.0 43200 < th dose dependent rect. 24 10
439 292.75 radiation 10.0 1440 < th dose independent rect. 15 19
486 292.84 radiation 1.0 14400 < th dose dependent rect. 7 3
494 292.86 humidity 80.0 43200 > th dose dependent rect. 17 23
514 292.89 humidity 80.0 43200 > th dose dependent rect. 10 18
552 292.96 humidity 80.0 43200 > th dose dependent no NA NA
567 293.01 precipitation 0.1 4320 > th dose independent rect. 12 5
605 293.09 wind 1.0 43200 > th dose dependent rect. 12 1
608 293.10 precipitation 0.1 4320 < th dose independent rect. 12 5
613 293.10 precipitation 0.1 4320 < th dose dependent rect. 12 5
614 293.10 humidity 80.0 43200 > th dose dependent rect. 5 23
615 293.10 humidity 80.0 43200 > th dose dependent rect. 20 23
693 293.30 precipitation 0.1 4320 < th dose independent rect. 8 9
696 293.30 precipitation 0.1 4320 < th dose dependent rect. 8 9
701 293.33 wind 1.0 43200 < th dose independent rect. 1 9
733 293.39 precipitation 0.1 4320 > th dose independent rect. 8 9
739 293.39 precipitation 0.1 4320 > th dose dependent rect. 4 13
755 293.42 precipitation 0.1 4320 > th dose independent sin 3 NA
756 293.42 precipitation 0.1 4320 < th dose independent sin 3 NA
760 293.42 precipitation 0.1 4320 < th dose dependent sin 3 NA
762 293.43 radiation 1.0 14400 > th dose independent rect. 7 7
778 293.45 humidity 90.0 43200 > th dose dependent rect. 22 4
789 293.47 precipitation 0.1 4320 > th dose dependent rect. 8 6
794 293.49 radiation 1.0 14400 < th dose independent rect. 7 7
797 293.50 precipitation 0.1 14400 > th dose dependent rect. 1 4
804 293.51 humidity 90.0 43200 > th dose dependent rect. 23 2
805 293.51 precipitation 0.1 4320 > th dose dependent rect. 6 8
834 293.57 precipitation 0.1 4320 > th dose dependent sin 4 NA
844 293.59 precipitation 0.1 4320 > th dose independent rect. 6 11
855 293.60 wind 3.0 43200 < th dose independent rect. 6 7
863 293.61 humidity 90.0 43200 < th dose independent rect. 21 18
879 293.64 radiation 10.0 1440 < th dose independent rect. 6 4
900 293.68 precipitation 0.1 4320 < th dose independent rect. 6 11
903 293.68 precipitation 0.1 4320 < th dose dependent rect. 6 11
906 293.69 radiation 1.0 14400 < th dose dependent rect. 4 1
932 293.72 precipitation 0.1 4320 > th dose independent rect. 18 23
933 293.72 precipitation 0.1 4320 < th dose independent rect. 18 23
936 293.72 precipitation 0.1 4320 < th dose dependent rect. 18 23
965 293.79 radiation 10.0 1440 < th dose independent sin 11 NA
981 293.82 wind 3.0 43200 > th dose independent rect. 6 7
988 293.83 humidity 80.0 43200 < th dose dependent rect. 5 1