Os05g0199100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0199100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 557.01 | 1.11 | 7.94 | -3.69 | 1.85 | 3.55 | 0.634 | -5.04 | -0.584 | 7.7 | 27.98 | 1224 | -- | -- |
| 560.35 | 1.1 | 7.88 | -2.68 | 1.81 | 3.06 | 0.562 | -- | -0.599 | 7.8 | 27.45 | 1218 | -- | -- |
| 558.07 | 1.1 | 7.95 | -3.71 | 1.85 | 3.58 | -- | -5.15 | -0.605 | 7.77 | 27.91 | 1223 | -- | -- |
| 560.84 | 1.1 | 7.83 | -2.63 | 1.84 | 3.06 | -- | -- | -0.497 | 7.79 | 27.67 | 1213 | -- | -- |
| 730.84 | 1.26 | 8 | -3.69 | -- | 3.45 | -- | -4.89 | -0.594 | -- | 27.86 | 1302 | -- | -- |
| 954.23 | 1.45 | 7.86 | -1.79 | 1.8 | -- | 1.56 | -- | -0.618 | 6.49 | -- | -- | -- | -- |
| 959.73 | 1.45 | 7.87 | -1.76 | 1.81 | -- | -- | -- | -0.621 | 6.69 | -- | -- | -- | -- |
| 730.7 | 1.26 | 7.9 | -2.66 | -- | 2.95 | -- | -- | -0.562 | -- | 27.22 | 1309 | -- | -- |
| 730.85 | 1.26 | 7.76 | -- | 1.8 | 2.51 | -- | -- | -0.0813 | 7.61 | 28.75 | 1197 | -- | -- |
| 1130.79 | 1.57 | 7.9 | -1.72 | -- | -- | -- | -- | -0.585 | -- | -- | -- | -- | -- |
| 1041.48 | 1.51 | 7.82 | -- | 1.79 | -- | -- | -- | -0.425 | 6.75 | -- | -- | -- | -- |
| 897.23 | 1.4 | 7.74 | -- | -- | 2.45 | -- | -- | 0.15 | -- | 30.2 | 1255 | -- | -- |
| 1208.75 | 1.62 | 7.86 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 585.69 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 3 | 586.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 17 | 586.14 | temperature | 30 | 1440 | > th | dose dependent | sin | 18 | NA |
| 21 | 586.35 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 35 | 586.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 104 | 587.90 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 197 | 588.07 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 328 | 595.62 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 347 | 595.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 368 | 596.69 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 376 | 596.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 377 | 596.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 378 | 596.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 387 | 597.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 429 | 597.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 475 | 598.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 488 | 598.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 512 | 599.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 547 | 599.85 | temperature | 30 | 1440 | < th | dose independent | sin | 17 | NA |
| 564 | 599.95 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 565 | 599.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 566 | 599.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 577 | 600.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 580 | 600.02 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 583 | 600.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 584 | 600.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 588 | 600.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 592 | 600.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 781 | 602.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 789 | 602.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 790 | 602.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 793 | 602.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 852 | 603.05 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 967 | 603.72 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 982 | 603.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 983 | 603.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |