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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0198000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0197) R2 : 3.6e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00531 (0.0415) R2dN8 : 4.64e-05 R2N8 : 3.6e-05
σ : 0.371
deviance : 63.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.9 0.364 3.23 -0.1 0.171 0.226 -0.0347 0.884 -0.00139 7.88 999.7 4124 -- --
60.27 0.362 3.23 -0.116 0.173 0.252 -0.0132 -- 0.0127 7.87 1006 1991 -- --
59.89 0.36 3.23 -0.0968 0.169 0.299 -- 1.15 -0.00361 7.96 998.9 4091 -- --
60.27 0.362 3.23 -0.116 0.172 0.252 -- -- 0.0135 7.9 1006 1988 -- --
61.46 0.365 3.23 -0.0988 -- 0.292 -- 1.18 -0.00567 -- 998.9 4156 -- --
61.42 0.367 3.23 -0.0907 0.171 -- -0.0348 -- -0.0176 7.86 -- -- -- --
61.42 0.367 3.23 -0.0916 0.171 -- -- -- -0.0176 7.89 -- -- -- --
61.88 0.366 3.23 -0.114 -- 0.238 -- -- 0.0157 -- 1006 2540 -- --
60.62 0.363 3.22 -- 0.172 0.237 -- -- 0.024 7.94 1006 1915 -- --
63.01 0.371 3.24 -0.0897 -- -- -- -- -0.0153 -- -- -- -- --
61.64 0.367 3.23 -- 0.171 -- -- -- -0.00737 7.92 -- -- -- --
62.22 0.367 3.23 -- -- 0.223 -- -- 0.0259 -- 1006 2541 -- --
63.23 0.371 3.24 -- -- -- -- -- -0.00531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.30 wind 1.0 30 < th dose independent rect. 10 1
2 58.30 temperature 10.0 1440 > th dose independent rect. 11 1
6 58.30 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 58.30 precipitation 0.1 1440 < th dose independent rect. 11 1
10 58.30 temperature 10.0 1440 > th dose independent rect. 12 23
13 58.30 wind 1.0 30 < th dose dependent rect. 10 1
14 58.30 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 58.42 radiation 40.0 30 < th dose independent rect. 10 1
16 58.43 humidity 80.0 10 < th dose independent rect. 5 3
18 58.46 radiation 30.0 90 > th dose dependent rect. 15 17
20 58.50 temperature 25.0 30 > th dose dependent rect. 10 1
28 58.57 radiation 40.0 30 < th dose dependent rect. 10 1
29 58.59 radiation 20.0 10 > th dose dependent rect. 16 1
59 58.60 radiation 10.0 10 > th dose independent rect. 15 17
92 58.62 humidity 70.0 30 < th dose independent rect. 10 1
93 58.65 radiation 40.0 90 > th dose independent rect. 15 1
128 58.67 atmosphere 1010.0 30 < th dose independent rect. 10 1
129 58.67 radiation 20.0 10 > th dose independent rect. 15 1
164 58.67 atmosphere 1005.0 30 > th dose dependent rect. 10 1
199 58.73 atmosphere 1005.0 30 > th dose independent rect. 10 1
200 58.75 temperature 25.0 30 > th dose independent rect. 10 1
251 58.80 humidity 60.0 30 > th dose independent rect. 10 1
255 58.81 radiation 20.0 30 > th dose independent rect. 10 1
256 58.81 radiation 30.0 10 < th dose dependent rect. 11 15
257 58.83 radiation 30.0 30 < th dose independent rect. 11 15
261 58.86 temperature 10.0 30 > th dose independent rect. 10 1
263 58.86 temperature 30.0 30 < th dose independent rect. 10 1
265 58.86 humidity 90.0 30 < th dose independent rect. 10 1
268 58.86 radiation 1.0 30 > th dose independent rect. 10 1
269 58.86 precipitation 0.1 30 < th dose independent rect. 10 1
270 58.86 temperature 10.0 30 > th dose independent rect. 11 23
272 58.86 precipitation 0.1 30 < th dose dependent rect. 10 1
273 58.87 wind 3.0 1440 > th dose independent rect. 6 2
274 58.87 humidity 80.0 30 < th dose dependent rect. 10 1
276 58.88 wind 1.0 30 > th dose independent rect. 10 1
307 58.89 radiation 10.0 30 > th dose independent rect. 7 1
311 58.92 wind 3.0 1440 < th dose independent rect. 6 2
331 58.96 humidity 50.0 30 > th dose dependent rect. 10 1
360 59.10 humidity 60.0 10 < th dose independent rect. 15 1
369 59.13 wind 1.0 90 < th dose dependent rect. 15 2
375 59.15 temperature 25.0 90 > th dose independent rect. 4 1
379 59.15 radiation 1.0 30 > th dose dependent rect. 10 1
384 59.20 wind 1.0 1440 > th dose dependent rect. 7 1
387 59.21 atmosphere 1015.0 30 < th dose dependent rect. 10 1
406 59.24 wind 5.0 1440 < th dose dependent rect. 7 1
409 59.27 temperature 25.0 90 > th dose dependent rect. 4 1
448 59.35 radiation 30.0 30 < th dose independent rect. 8 18
452 59.36 humidity 60.0 10 < th dose dependent rect. 15 1
474 59.37 atmosphere 1005.0 90 > th dose dependent rect. 2 2
480 59.38 atmosphere 1005.0 10 > th dose dependent rect. 2 3
486 59.39 radiation 30.0 10 < th dose dependent rect. 8 18
487 59.40 wind 1.0 30 > th dose dependent rect. 10 1
488 59.40 wind 9.0 30 < th dose dependent rect. 2 14
524 59.47 wind 1.0 90 < th dose independent rect. 15 2
526 59.47 humidity 50.0 90 > th dose dependent rect. 23 14
528 59.48 wind 1.0 14400 < th dose independent rect. 2 1
530 59.48 atmosphere 1005.0 14400 < th dose independent rect. 1 1
533 59.48 wind 3.0 30 < th dose independent rect. 2 15
551 59.49 wind 3.0 10 < th dose dependent rect. 16 1
573 59.51 wind 1.0 14400 > th dose independent rect. 2 1
574 59.51 atmosphere 1005.0 14400 > th dose independent rect. 23 1
610 59.52 temperature 25.0 30 > th dose independent rect. 7 1
623 59.54 wind 1.0 30 > th dose dependent rect. 4 1
627 59.55 atmosphere 1005.0 14400 > th dose independent rect. 1 1
657 59.57 atmosphere 995.0 43200 < th dose dependent rect. 8 11
669 59.58 atmosphere 995.0 43200 < th dose dependent rect. 9 9
690 59.60 wind 3.0 10 < th dose independent rect. 16 1
692 59.60 temperature 10.0 43200 > th dose independent rect. 9 1
697 59.60 humidity 50.0 270 > th dose dependent rect. 21 15
705 59.61 wind 3.0 30 < th dose independent rect. 2 19
721 59.62 atmosphere 995.0 43200 < th dose dependent sin 22 NA
727 59.62 humidity 50.0 30 > th dose dependent rect. 8 11
761 59.65 humidity 90.0 43200 > th dose independent rect. 5 1
777 59.65 humidity 50.0 90 > th dose dependent rect. 21 22
784 59.66 atmosphere 1005.0 4320 < th dose dependent rect. 23 1
790 59.66 humidity 50.0 30 > th dose dependent rect. 3 23
807 59.68 atmosphere 1005.0 4320 > th dose independent rect. 21 1
810 59.68 wind 1.0 14400 < th dose dependent rect. 2 1
816 59.69 atmosphere 1005.0 4320 < th dose independent rect. 21 1
817 59.69 wind 1.0 14400 > th dose independent rect. 4 3
825 59.69 humidity 90.0 90 < th dose dependent rect. 2 5
830 59.69 radiation 40.0 4320 > th dose dependent rect. 15 17
840 59.71 humidity 90.0 43200 < th dose independent rect. 5 1
869 59.72 humidity 60.0 10 < th dose independent sin 13 NA
870 59.72 temperature 20.0 720 > th dose independent rect. 5 1
876 59.72 humidity 60.0 10 > th dose independent rect. 12 14
888 59.73 humidity 80.0 4320 > th dose independent rect. 9 4
889 59.73 humidity 80.0 4320 < th dose independent rect. 9 4
906 59.73 wind 5.0 30 < th dose dependent rect. 2 19
907 59.73 wind 9.0 10 < th dose dependent rect. 2 22
923 59.74 humidity 50.0 30 > th dose dependent rect. 8 18
925 59.75 wind 1.0 14400 < th dose independent rect. 4 3
958 59.76 atmosphere 1005.0 30 > th dose independent rect. 2 6
960 59.76 humidity 60.0 10 > th dose independent rect. 15 11
978 59.77 humidity 90.0 270 < th dose independent rect. 1 7
989 59.78 humidity 90.0 4320 < th dose independent rect. 8 1
998 59.78 humidity 80.0 4320 < th dose independent rect. 5 8