Os05g0197200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Germin family protein.
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Os05g0197200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Germin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.48 | 0.545 | 10.6 | 0.582 | 0.178 | 1.69 | 0.421 | 0.738 | -0.243 | 6.63 | 22.5 | 2137 | -- | -- |
| 135.5 | 0.542 | 10.5 | 0.821 | 0.188 | 1.69 | 0.517 | -- | -0.189 | 6.19 | 22.4 | 2220 | -- | -- |
| 134.72 | 0.541 | 10.6 | 0.595 | 0.19 | 1.7 | -- | 0.773 | -0.237 | 6.87 | 22.5 | 2202 | -- | -- |
| 136.03 | 0.543 | 10.5 | 0.856 | 0.19 | 1.69 | -- | -- | -0.175 | 7.02 | 22.4 | 2219 | -- | -- |
| 136.55 | 0.544 | 10.6 | 0.598 | -- | 1.7 | -- | 0.76 | -0.235 | -- | 22.5 | 2193 | -- | -- |
| 244.1 | 0.732 | 10.7 | 0.176 | 0.291 | -- | 0.234 | -- | -0.798 | 8.77 | -- | -- | -- | -- |
| 244.26 | 0.732 | 10.7 | 0.185 | 0.289 | -- | -- | -- | -0.797 | 9.08 | -- | -- | -- | -- |
| 137.89 | 0.547 | 10.5 | 0.862 | -- | 1.71 | -- | -- | -0.167 | -- | 22.44 | 2200 | -- | -- |
| 153.29 | 0.577 | 10.6 | -- | 0.203 | 1.47 | -- | -- | -0.339 | 7.77 | 22.5 | 2079 | -- | -- |
| 249.07 | 0.737 | 10.7 | 0.184 | -- | -- | -- | -- | -0.795 | -- | -- | -- | -- | -- |
| 245.15 | 0.732 | 10.7 | -- | 0.289 | -- | -- | -- | -0.817 | 9.03 | -- | -- | -- | -- |
| 155.48 | 0.581 | 10.6 | -- | -- | 1.49 | -- | -- | -0.335 | -- | 22.48 | 2123 | -- | -- |
| 249.96 | 0.738 | 10.7 | -- | -- | -- | -- | -- | -0.816 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 11 | 140.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 13 | 140.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 17 | 140.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 26 | 141.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 27 | 141.01 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 43 | 141.42 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 70 | 141.85 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 106 | 142.23 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 114 | 142.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 115 | 142.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 117 | 142.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 166 | 142.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 184 | 142.82 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 229 | 143.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 503 | 144.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 704 | 145.24 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 752 | 145.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 968 | 146.25 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |