Os05g0196500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor jumonji, JmjN domain containing protein.
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Os05g0196500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor jumonji, JmjN domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.88 | 0.155 | 11.3 | 0.69 | 0.034 | 0.18 | 0.277 | 1.17 | 0.102 | 16 | 20.6 | 2791 | -- | -- |
| 12.77 | 0.166 | 11.4 | 0.419 | 0.0502 | 0.114 | 0.142 | -- | 0.0258 | 15.6 | 24.1 | 2485 | -- | -- |
| 10.82 | 0.153 | 11.3 | 0.754 | 0.0263 | 0.117 | -- | 1.07 | 0.107 | 14.3 | 21.6 | 1774 | -- | -- |
| 12.74 | 0.166 | 11.4 | 0.418 | 0.068 | 0.138 | -- | -- | 0.0146 | 14.3 | 24.9 | 1219 | -- | -- |
| 10.87 | 0.154 | 11.3 | 0.749 | -- | 0.114 | -- | 1.06 | 0.109 | -- | 21.7 | 1763 | -- | -- |
| 13.24 | 0.171 | 11.4 | 0.473 | 0.0329 | -- | 0.199 | -- | 0.054 | 15.8 | -- | -- | -- | -- |
| 13.36 | 0.171 | 11.4 | 0.476 | 0.0343 | -- | -- | -- | 0.0551 | 14.9 | -- | -- | -- | -- |
| 12.86 | 0.167 | 11.4 | 0.427 | -- | 0.134 | -- | -- | 0.0153 | -- | 24.72 | 1935 | -- | -- |
| 17.06 | 0.192 | 11.4 | -- | 0.0537 | 0.265 | -- | -- | -0.0568 | 14.3 | 24.3 | 4149 | -- | -- |
| 13.42 | 0.171 | 11.4 | 0.474 | -- | -- | -- | -- | 0.0542 | -- | -- | -- | -- | -- |
| 19.32 | 0.206 | 11.4 | -- | 0.025 | -- | -- | -- | 0.0021 | 14.7 | -- | -- | -- | -- |
| 13.77 | 0.173 | 11.4 | -- | -- | 0.346 | -- | -- | -0.119 | -- | 22.07 | 47520 | -- | -- |
| 19.35 | 0.205 | 11.4 | -- | -- | -- | -- | -- | 0.00158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 3 | 10.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 26 | 10.55 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 51 | 10.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 78 | 10.72 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 93 | 10.75 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 110 | 10.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 115 | 10.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 159 | 10.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 225 | 10.86 | temperature | 25 | 4320 | < th | dose dependent | sin | 17 | NA |
| 337 | 10.90 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 453 | 10.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 522 | 10.94 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |