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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0195000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0151) R2 : 0.00245
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0335 (0.0317) R2dN8 : 0.00316 R2N8 : 0.00245
σ : 0.283
deviance : 36.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.03 0.278 2.81 -0.154 0.0615 0.22 -0.0664 -0.995 0.0351 18.8 0.06819 4090 -- --
36 0.279 2.79 -0.152 0.0647 0.0883 -0.0473 -- 0.0277 18.5 2.04e-05 4180 -- --
35.04 0.276 2.81 -0.152 0.0608 0.222 -- -1 0.0356 18.7 0.07767 4090 -- --
35.99 0.279 2.79 -0.163 0.0636 0.0773 -- -- 0.0274 18.4 -1.139e-06 4090 -- --
35.24 0.276 2.81 -0.157 -- 0.226 -- -1.03 0.0333 -- 0.103 4090 -- --
36.1 0.282 2.79 -0.144 0.0643 -- -0.0574 -- 0.019 18.5 -- -- -- --
36.11 0.281 2.79 -0.143 0.0641 -- -- -- 0.0188 18.4 -- -- -- --
36.21 0.28 2.79 -0.165 -- 0.0758 -- -- 0.0253 -- -0.01286 4090 -- --
36.49 0.281 2.79 -- 0.0345 -0.0862 -- -- 0.0342 19 0.4486 2772 -- --
36.33 0.282 2.79 -0.144 -- -- -- -- 0.0175 -- -- -- -- --
36.65 0.283 2.79 -- 0.066 -- -- -- 0.0347 18.3 -- -- -- --
36.62 0.282 2.79 -- -- -0.119 -- -- 0.0212 -- -0.09186 2571 -- --
36.88 0.283 2.79 -- -- -- -- -- 0.0335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.24 radiation 1.0 90 < th dose independent rect. 10 1
3 28.24 radiation 1.0 90 < th dose dependent rect. 10 1
5 28.32 radiation 1.0 10 < th dose independent rect. 7 5
7 28.32 radiation 1.0 10 < th dose dependent rect. 7 5
9 28.49 radiation 1.0 10 < th dose independent rect. 11 1
26 28.49 radiation 1.0 10 < th dose dependent rect. 11 1
79 33.05 wind 3.0 10 < th dose independent rect. 12 1
87 33.47 radiation 20.0 10 < th dose independent rect. 12 1
128 34.36 atmosphere 995.0 14400 > th dose independent rect. 19 6
130 34.37 atmosphere 995.0 14400 > th dose independent rect. 19 4
132 34.38 atmosphere 995.0 14400 > th dose independent rect. 22 3
141 34.41 atmosphere 995.0 14400 > th dose independent rect. 19 11
144 34.41 atmosphere 995.0 14400 > th dose independent rect. 19 17
145 34.42 atmosphere 995.0 14400 > th dose independent rect. 3 1
154 34.42 atmosphere 995.0 14400 > th dose independent rect. 22 8
159 34.42 atmosphere 995.0 14400 > th dose independent rect. 22 14
163 34.43 atmosphere 995.0 14400 < th dose independent rect. 1 1
168 34.43 atmosphere 995.0 14400 < th dose independent rect. 21 1
330 34.43 atmosphere 995.0 14400 < th dose dependent rect. 1 1
335 34.43 atmosphere 995.0 14400 < th dose dependent rect. 21 1
498 34.45 atmosphere 995.0 14400 > th dose independent rect. 5 1
512 34.45 atmosphere 995.0 14400 > th dose independent rect. 3 9
518 34.45 atmosphere 995.0 14400 < th dose dependent sin 8 NA
579 34.55 radiation 1.0 1440 < th dose dependent rect. 2 3
589 34.61 radiation 1.0 1440 < th dose dependent rect. 22 7
590 34.61 radiation 1.0 1440 < th dose dependent rect. 19 10
591 34.62 atmosphere 1010.0 270 > th dose independent rect. 21 1
607 34.63 precipitation 0.1 4320 > th dose independent rect. 12 1
610 34.63 precipitation 0.1 4320 > th dose dependent rect. 12 1
615 34.67 precipitation 0.1 4320 < th dose independent rect. 11 2
616 34.67 precipitation 0.1 4320 < th dose dependent rect. 11 2
621 34.69 temperature 20.0 1440 > th dose independent rect. 9 1
629 34.71 wind 3.0 10 < th dose dependent rect. 12 1
633 34.72 wind 1.0 4320 < th dose dependent rect. 19 1
634 34.73 precipitation 0.1 4320 < th dose independent rect. 9 4
635 34.73 precipitation 0.1 4320 < th dose dependent rect. 9 4
636 34.74 atmosphere 995.0 14400 < th dose independent sin 8 NA
639 34.75 precipitation 0.1 4320 > th dose independent rect. 9 4
641 34.75 precipitation 0.1 4320 > th dose dependent rect. 9 4
656 34.78 precipitation 0.1 4320 > th dose independent rect. 16 1
659 34.79 precipitation 0.1 4320 > th dose independent rect. 21 1
663 34.79 radiation 20.0 10 < th dose independent rect. 20 17
664 34.79 precipitation 0.1 4320 > th dose dependent rect. 16 1
665 34.79 precipitation 0.1 4320 > th dose dependent rect. 21 1
669 34.80 precipitation 0.1 4320 < th dose independent rect. 16 1
672 34.80 precipitation 0.1 4320 < th dose dependent rect. 16 1
684 34.82 atmosphere 995.0 14400 > th dose independent rect. 19 19
688 34.83 wind 1.0 4320 < th dose independent rect. 19 1
689 34.83 precipitation 0.1 4320 < th dose independent rect. 21 1
693 34.83 precipitation 0.1 4320 < th dose dependent rect. 21 1
737 34.87 radiation 20.0 10 < th dose dependent rect. 20 17
743 34.88 precipitation 0.1 4320 > th dose dependent rect. 8 11
745 34.89 temperature 20.0 1440 < th dose independent rect. 9 1
753 34.89 radiation 1.0 1440 < th dose independent rect. 2 4
757 34.89 precipitation 0.1 4320 > th dose independent rect. 8 11
758 34.89 precipitation 0.1 4320 < th dose independent rect. 8 11
769 34.89 precipitation 0.1 4320 < th dose dependent rect. 8 11
770 34.90 wind 1.0 4320 > th dose independent rect. 19 1
772 34.90 radiation 1.0 1440 < th dose independent rect. 4 2
782 34.90 radiation 1.0 1440 < th dose independent rect. 22 8
783 34.90 radiation 1.0 1440 < th dose independent rect. 19 11
793 34.90 precipitation 0.1 4320 > th dose dependent rect. 11 8
797 34.90 precipitation 0.1 4320 > th dose dependent rect. 8 14
802 34.91 precipitation 0.1 4320 > th dose independent rect. 11 8
803 34.91 precipitation 0.1 4320 < th dose independent rect. 11 8
811 34.91 precipitation 0.1 4320 > th dose dependent rect. 15 4
812 34.91 precipitation 0.1 4320 < th dose dependent rect. 11 8
830 34.92 precipitation 0.1 4320 > th dose independent rect. 8 14
831 34.92 precipitation 0.1 4320 < th dose independent rect. 8 14
851 34.92 precipitation 0.1 4320 < th dose dependent rect. 8 14
865 34.93 radiation 1.0 1440 > th dose independent rect. 4 2
900 34.93 precipitation 0.1 4320 > th dose dependent rect. 11 11
915 34.94 radiation 40.0 14400 > th dose independent rect. 7 1
934 34.94 precipitation 0.1 4320 > th dose independent rect. 11 11
936 34.94 precipitation 0.1 4320 < th dose independent rect. 11 11
950 34.94 radiation 40.0 14400 > th dose dependent rect. 7 1
968 34.94 precipitation 0.1 4320 < th dose dependent rect. 11 11
986 34.95 precipitation 0.1 4320 < th dose independent rect. 18 1