Os05g0193600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0193600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.42	(0.0411)	R²	:	0.509
β₁	:	-1.73	(0.16)	R²_dD	:	0.153	R²_D	:	-0.00395
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.38	(0.18)	R²_dE	:	0.482	R²_E	:	0.34
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.167	(0.0929)	R²_dN8	:	0.00536	R²_N8	:	0.0395
σ	:	0.756
deviance	:	263.64
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	11.91
memory length	:	2014
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
251.35	0.745	5.5	-2.18	0.656	3.37	0.167	-2.43	0.0585	18.7	9.932	1423	--	--
256.49	0.746	5.43	-1.64	0.648	3.32	0.319	--	0.192	18.9	10.5	1444	--	--
251.42	0.738	5.5	-2.18	0.658	3.37	--	-2.45	0.0581	18.7	10.07	1420	--	--
256.56	0.746	5.43	-1.64	0.658	3.33	--	--	0.199	18.7	9.835	1425	--	--
268.56	0.763	5.46	-1.97	--	3.53	--	-2.6	0.145	--	9.61	765	--	--
447.22	0.991	5.29	-0.57	0.582	--	0.405	--	0.816	19.8	--	--	--	--
447.68	0.991	5.29	-0.58	0.584	--	--	--	0.817	19.7	--	--	--	--
263.64	0.756	5.42	-1.73	--	3.38	--	--	0.167	--	11.91	2014	--	--
317.92	0.83	5.37	--	0.655	2.73	--	--	0.483	17.9	11.13	1283	--	--
466.06	1.01	5.27	-0.588	--	--	--	--	0.808	--	--	--	--	--
456.56	1	5.27	--	0.588	--	--	--	0.881	19.6	--	--	--	--
325.91	0.841	5.34	--	--	2.94	--	--	0.511	--	6.472	692	--	--
475.17	1.02	5.26	--	--	--	--	--	0.873	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	247.34	temperature	30	1440	< th	dose dependent	rect.	5	4
2	247.41	temperature	10	1440	> th	dose dependent	rect.	5	4
3	247.41	temperature	10	1440	> th	dose dependent	rect.	4	6
4	247.50	temperature	10	1440	> th	dose dependent	rect.	3	8
7	247.58	temperature	30	1440	< th	dose dependent	rect.	4	6
10	247.77	temperature	10	1440	> th	dose dependent	rect.	20	16
13	247.85	temperature	30	1440	< th	dose dependent	rect.	3	8
15	247.87	temperature	10	1440	> th	dose dependent	rect.	17	19
39	248.20	temperature	10	1440	> th	dose dependent	sin	6	NA
61	248.55	temperature	30	1440	< th	dose dependent	rect.	17	19
81	248.74	temperature	30	1440	< th	dose dependent	rect.	20	16
157	249.47	temperature	30	1440	< th	dose dependent	sin	6	NA
340	251.36	temperature	10	1440	> th	dose dependent	no	NA	NA
348	251.42	temperature	30	1440	< th	dose dependent	rect.	20	23
369	251.64	temperature	10	1440	> th	dose dependent	rect.	1	23
372	251.66	temperature	10	1440	> th	dose dependent	rect.	3	23
397	251.77	temperature	30	1440	< th	dose dependent	rect.	3	23
402	251.79	temperature	30	1440	< th	dose dependent	no	NA	NA
415	251.84	temperature	30	1440	< th	dose dependent	rect.	1	23
418	251.87	temperature	10	1440	> th	dose dependent	rect.	7	23
428	251.95	temperature	30	1440	< th	dose dependent	rect.	5	23
959	257.26	temperature	25	4320	< th	dose dependent	rect.	23	1
962	257.29	temperature	30	1440	< th	dose dependent	rect.	17	9