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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0190500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acid phosphatase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0457) R2 : 0.15
β1 : -1.04 (0.166) R2dD : 0.0907 R2D : -0.00246
β2 : -- (--) R2dC : -- R2C : --
β3 : -16.6 (2.69) R2dE : 1.55 R2E : -1.99
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -75.2 (10.6) R2dD*E : 2.03 R2D*E : -1.39
γ1 : -0.108 (0.0886) R2dN8 : 0.00376 R2N8 : -0.0244
σ : 0.774
deviance : 275.88
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.002
memory length : 87
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.38
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.24 0.767 3.24 -1.01 0.371 -16.7 -0.846 -77.2 -0.107 8.37 9.058 89 6.44 --
306.89 0.822 3.39 -0.629 0.287 -0.0101 -0.534 -- -0.147 9.48 9.058 89 6.44 --
268.41 0.763 3.25 -1.03 0.37 -16.4 -- -75.7 -0.108 8.19 9.015 87 6.36 --
298.5 0.805 3.36 -0.568 0.334 1.57 -- -- -0.0789 9.04 9.197 58 6.25 --
275.88 0.774 3.26 -1.04 -- -16.6 -- -75.2 -0.108 -- 9.002 87 6.38 --
306.89 0.821 3.39 -0.628 0.287 -- -0.534 -- -0.147 9.48 -- -- -- --
307.8 0.822 3.39 -0.65 0.298 -- -- -- -0.149 8.83 -- -- -- --
304.44 0.813 3.39 -0.562 -- 1.55 -- -- -0.113 -- 9.2 58 7.59 --
305.46 0.814 3.37 -- 0.358 1.97 -- -- -0.0491 8.38 9.2 58 7.61 --
312.85 0.826 3.4 -0.65 -- -- -- -- -0.147 -- -- -- -- --
318.94 0.835 3.38 -- 0.297 -- -- -- -0.077 8.99 -- -- -- --
311.83 0.822 3.38 -- -- 2.42 -- -- -0.0506 -- 9.094 75 8.19 --
324 0.84 3.38 -- -- -- -- -- -0.0751 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.12 wind 9 10 > th dose independent rect. 18 1
4 262.12 wind 9 10 > th dose dependent rect. 18 1
7 263.10 wind 9 90 > th dose dependent rect. 17 17
8 263.21 wind 9 90 > th dose dependent rect. 17 9
16 263.25 wind 9 90 > th dose dependent rect. 17 4
24 264.20 wind 9 90 > th dose independent rect. 17 17
25 264.24 wind 9 90 > th dose independent rect. 17 9
75 268.67 wind 9 90 > th dose independent sin 13 NA
77 269.88 wind 9 90 > th dose dependent sin 13 NA
83 271.79 wind 9 90 > th dose independent rect. 14 12
91 271.80 wind 9 90 > th dose independent rect. 14 8
115 272.07 wind 9 90 > th dose independent rect. 12 14
146 273.72 wind 9 90 < th dose independent sin 14 NA
151 274.32 wind 9 90 > th dose dependent rect. 14 20
153 274.37 wind 9 90 > th dose dependent rect. 14 12
161 274.38 wind 9 90 > th dose dependent rect. 14 8
170 274.39 wind 9 90 > th dose dependent rect. 14 5
183 274.64 wind 9 90 > th dose dependent rect. 12 22
201 274.70 wind 9 90 > th dose dependent rect. 12 9
286 280.59 temperature 15 720 > th dose independent rect. 18 7
287 280.62 atmosphere 1005 90 < th dose dependent rect. 10 1
288 280.82 atmosphere 1005 10 < th dose dependent rect. 10 2
325 283.29 humidity 70 90 < th dose independent rect. 16 1
326 283.35 temperature 15 30 > th dose independent rect. 3 23
334 283.90 temperature 15 720 < th dose dependent rect. 1 22
345 284.22 temperature 15 720 > th dose independent rect. 12 8
354 284.30 wind 9 10 > th dose independent sin 12 NA
356 284.33 temperature 15 720 > th dose independent sin 18 NA
365 284.78 temperature 15 720 < th dose independent rect. 5 21
366 284.79 temperature 15 720 < th dose dependent rect. 5 21
375 284.94 temperature 15 720 < th dose independent sin 19 NA
376 284.96 temperature 15 720 < th dose dependent sin 19 NA
377 284.96 temperature 15 720 < th dose dependent rect. 9 17
381 285.01 temperature 15 720 < th dose dependent sin 1 NA
382 285.02 temperature 15 720 < th dose independent rect. 9 17
386 285.08 atmosphere 1005 90 < th dose independent rect. 10 1
395 285.20 temperature 15 720 > th dose independent rect. 12 13
396 285.22 temperature 15 720 > th dose independent sin 20 NA
402 285.33 temperature 15 720 < th dose dependent rect. 13 13
409 285.41 temperature 15 720 < th dose dependent rect. 17 9
431 285.58 temperature 20 1440 < th dose independent rect. 12 1
455 285.75 temperature 15 720 < th dose independent sin 0 NA
475 285.93 temperature 15 720 < th dose dependent no NA NA
477 285.93 temperature 15 720 < th dose dependent rect. 9 22
478 285.93 temperature 15 720 < th dose dependent rect. 17 22
481 285.93 temperature 15 720 < th dose dependent rect. 13 23
504 286.02 temperature 15 720 > th dose independent rect. 13 2
505 286.02 temperature 15 720 < th dose independent rect. 17 9
546 286.15 temperature 15 270 > th dose independent sin 15 NA
547 286.15 temperature 15 270 > th dose independent sin 3 NA
566 286.24 atmosphere 995 4320 > th dose independent rect. 19 10
567 286.25 temperature 15 30 > th dose independent rect. 9 23
570 286.28 temperature 15 720 < th dose dependent rect. 17 14
579 286.28 temperature 15 720 < th dose dependent rect. 21 23
591 286.37 temperature 15 270 > th dose independent rect. 18 12
595 286.40 temperature 15 720 < th dose dependent rect. 3 17
607 286.48 temperature 15 10 > th dose independent rect. 12 14
671 286.85 temperature 15 1440 > th dose independent sin 22 NA
691 287.00 atmosphere 995 4320 > th dose independent rect. 21 14
692 287.01 atmosphere 995 4320 > th dose independent rect. 19 16
704 287.08 wind 7 10 > th dose dependent rect. 17 12
718 287.12 wind 7 10 > th dose dependent rect. 17 5
742 287.28 temperature 15 720 > th dose independent rect. 15 8
749 287.31 temperature 15 720 < th dose independent rect. 1 22
753 287.36 temperature 15 10 > th dose independent rect. 18 23
754 287.37 atmosphere 1005 10 < th dose dependent rect. 3 10
784 287.52 temperature 15 4320 < th dose dependent rect. 3 1
798 287.62 temperature 15 90 > th dose independent no NA NA
800 287.62 temperature 15 90 < th dose independent sin 7 NA
848 287.62 temperature 15 90 < th dose independent no NA NA
850 287.62 temperature 15 1440 < th dose independent rect. 5 1
852 287.62 temperature 15 1440 < th dose independent rect. 9 1
855 287.62 atmosphere 1015 1440 > th dose independent rect. 1 1
986 287.62 temperature 15 270 < th dose independent rect. 24 10