Os05g0188700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os05g0188700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.8 | 0.785 | 3.65 | -1.93 | 0.52 | -1.2 | -4.2 | -2.86 | -0.0671 | 11.7 | 5.8 | 5949 | -- | -- |
| 286.38 | 0.788 | 3.76 | -1.88 | 0.491 | -0.908 | -4.21 | -- | -0.159 | 11.7 | 5.3 | 6221 | -- | -- |
| 354.26 | 0.877 | 3.66 | -1.98 | 0.554 | -1.11 | -- | -2.68 | -0.0801 | 10.5 | 5.517 | 5886 | -- | -- |
| 358.59 | 0.882 | 3.77 | -2.02 | 0.499 | -0.929 | -- | -- | -0.19 | 10.4 | 5.9 | 5390 | -- | -- |
| 370.19 | 0.896 | 3.67 | -2.14 | -- | -1.41 | -- | -2.17 | -0.0411 | -- | 5.2 | 6585 | -- | -- |
| 297.45 | 0.809 | 3.79 | -1.47 | 0.53 | -- | -4.23 | -- | -0.27 | 11.7 | -- | -- | -- | -- |
| 373.11 | 0.905 | 3.79 | -1.64 | 0.58 | -- | -- | -- | -0.292 | 10.4 | -- | -- | -- | -- |
| 372.31 | 0.899 | 3.78 | -2.21 | -- | -1.26 | -- | -- | -0.184 | -- | 5.2 | 6590 | -- | -- |
| 433.14 | 0.975 | 3.74 | -- | 0.561 | 1.47 | -- | -- | -0.0714 | 10.1 | 7.7 | 3298 | -- | -- |
| 393.73 | 0.927 | 3.81 | -1.65 | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
| 444.4 | 0.986 | 3.75 | -- | 0.591 | -- | -- | -- | -0.109 | 10.6 | -- | -- | -- | -- |
| 417.84 | 0.952 | 3.74 | -- | -- | 1.58 | -- | -- | 0.0949 | -- | 7.4 | 40502 | -- | -- |
| 465.93 | 1.01 | 3.77 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.18 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 2 | 267.24 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 3 | 267.31 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 4 | 268.54 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 18 | 269.24 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 19 | 269.56 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 34 | 270.03 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 35 | 270.05 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 38 | 270.41 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 39 | 270.42 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 45 | 272.60 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 71 | 273.04 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 72 | 273.12 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 73 | 273.13 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 84 | 273.14 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 89 | 273.41 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 90 | 273.47 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 92 | 273.61 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 99 | 273.75 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 104 | 273.91 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 113 | 274.21 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 117 | 274.28 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 10 |
| 177 | 274.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 182 | 274.96 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 183 | 274.96 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 213 | 275.31 | wind | 3.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 218 | 275.47 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 258 | 275.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 259 | 275.79 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 24 | 15 |
| 269 | 275.92 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 24 | 13 |
| 313 | 276.18 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 324 | 276.32 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 5 |
| 338 | 276.46 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 346 | 276.51 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 347 | 276.51 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 350 | 276.51 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 353 | 276.51 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 354 | 276.51 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 356 | 276.51 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 359 | 276.51 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 366 | 276.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 367 | 276.52 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 369 | 276.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 372 | 276.53 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 376 | 276.53 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 408 | 276.78 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 409 | 276.78 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 413 | 276.82 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 415 | 276.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 418 | 276.82 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 422 | 276.82 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 432 | 276.82 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 433 | 276.82 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 442 | 276.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 451 | 276.92 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 8 |
| 460 | 276.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 472 | 277.06 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 483 | 277.13 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 504 | 277.25 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 512 | 277.34 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 517 | 277.38 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 523 | 277.41 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 533 | 277.47 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 560 | 277.65 | wind | 5.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 581 | 277.72 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 583 | 277.72 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 584 | 277.73 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 594 | 277.80 | wind | 9.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 661 | 278.02 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 672 | 278.09 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 6 | NA |
| 676 | 278.11 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 679 | 278.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 9 |
| 682 | 278.12 | wind | 5.0 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 694 | 278.18 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 703 | 278.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 707 | 278.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 733 | 278.35 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 736 | 278.36 | wind | 1.0 | 30 | < th | dose independent | rect. | 24 | 6 |
| 743 | 278.38 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 753 | 278.42 | humidity | 60.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 766 | 278.48 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 768 | 278.48 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 821 | 278.76 | humidity | 60.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 845 | 278.88 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 846 | 278.89 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 848 | 278.90 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 891 | 279.00 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 892 | 279.00 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 895 | 279.00 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 902 | 279.03 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 903 | 279.03 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 906 | 279.03 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 10 |
| 928 | 279.09 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 20 |
| 931 | 279.10 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 958 | 279.17 | wind | 3.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 980 | 279.24 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 22 |
| 993 | 279.28 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 17 |