Os05g0188300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0188300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.87 | 0.734 | 6.38 | 0.455 | 3.19 | 1.97 | 2.11 | -1.74 | 0.36 | 17.7 | 20.56 | 1114 | 4.05 | -- |
| 250.67 | 0.737 | 6.32 | 0.839 | 3.11 | 1.99 | 2.17 | -- | 0.458 | 17.7 | 20.52 | 1153 | 4.06 | -- |
| 254.52 | 0.743 | 6.37 | 0.422 | 3.24 | 1.97 | -- | -1.88 | 0.366 | 17.6 | 20.5 | 1121 | 4.36 | -- |
| 262.57 | 0.755 | 6.32 | 0.791 | 2.93 | 2.06 | -- | -- | 0.444 | 17.6 | 20.59 | 1177 | 3.12 | -- |
| 487.57 | 1.03 | 6.33 | 0.344 | -- | 3.71 | -- | 0.0653 | 0.174 | -- | 20.6 | 1046 | 4.45e-05 | -- |
| 373.18 | 0.906 | 6.2 | 1.6 | 3.04 | -- | 2.73 | -- | 0.958 | 17.1 | -- | -- | -- | -- |
| 392.04 | 0.927 | 6.19 | 1.6 | 3.06 | -- | -- | -- | 0.971 | 17.1 | -- | -- | -- | -- |
| 477.1 | 1.02 | 6.29 | 0.348 | -- | 4.26 | -- | -- | 0.258 | -- | 19.4 | 1078 | 0.000779 | -- |
| 276.94 | 0.775 | 6.35 | -- | 2.84 | 2.31 | -- | -- | 0.299 | 17.6 | 20.56 | 1191 | 2.78 | -- |
| 883.22 | 1.39 | 6.16 | 1.49 | -- | -- | -- | -- | 0.893 | -- | -- | -- | -- | -- |
| 459.5 | 1 | 6.23 | -- | 3.03 | -- | -- | -- | 0.793 | 17.1 | -- | -- | -- | -- |
| 477.95 | 1.02 | 6.3 | -- | -- | 4.55 | -- | -- | 0.258 | -- | 18.94 | 1086 | 1.2e-08 | -- |
| 941.77 | 1.43 | 6.2 | -- | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 250.10 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 4 | 252.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 5 | 253.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 20 | 254.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 23 | 254.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 24 | 255.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 64 | 257.08 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 98 | 259.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 106 | 259.34 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 176 | 262.44 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 215 | 264.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 218 | 264.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 221 | 264.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 234 | 265.25 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 19 |
| 255 | 265.83 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 276 | 266.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 480 | 272.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 617 | 274.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 626 | 275.01 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 637 | 275.18 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 660 | 275.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 664 | 275.60 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 680 | 275.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 685 | 275.82 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 686 | 275.86 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 751 | 276.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 770 | 276.76 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 891 | 278.08 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 908 | 278.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 940 | 278.66 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 980 | 279.10 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |