Os05g0186000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 30S ribosomal protein S31, chloroplast (Fragment).
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Os05g0186000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 30S ribosomal protein S31, chloroplast (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.2 | 0.431 | 12 | 0.67 | 1.42 | 0.652 | 0.0103 | 4.47 | -0.554 | 20.8 | 0.7247 | 11425 | -- | -- |
| 93.58 | 0.451 | 12.3 | -0.367 | 1.47 | 0.485 | 0.295 | -- | -0.907 | 20.8 | 30.61 | 18893 | -- | -- |
| 83.69 | 0.426 | 12 | 0.51 | 1.43 | 0.868 | -- | 4.64 | -0.592 | 20.8 | -1.001 | 17711 | -- | -- |
| 91.63 | 0.446 | 12.3 | -0.446 | 1.45 | 0.692 | -- | -- | -1.07 | 20.7 | 30.83 | 18968 | -- | -- |
| 195.9 | 0.652 | 12 | 0.453 | -- | 1 | -- | 4.77 | -0.658 | -- | 11.9 | 15158 | -- | -- |
| 103.36 | 0.477 | 12.2 | -0.139 | 1.42 | -- | -0.00981 | -- | -0.755 | 20.8 | -- | -- | -- | -- |
| 103.36 | 0.476 | 12.2 | -0.138 | 1.42 | -- | -- | -- | -0.755 | 20.8 | -- | -- | -- | -- |
| 203.02 | 0.664 | 12.3 | -0.452 | -- | 0.761 | -- | -- | -1.09 | -- | 29.95 | 19517 | -- | -- |
| 95.17 | 0.454 | 12.3 | -- | 1.4 | 0.526 | -- | -- | -0.965 | 20.8 | 30.6 | 18310 | -- | -- |
| 217.79 | 0.69 | 12.2 | -0.139 | -- | -- | -- | -- | -0.765 | -- | -- | -- | -- | -- |
| 103.86 | 0.477 | 12.2 | -- | 1.42 | -- | -- | -- | -0.74 | 20.8 | -- | -- | -- | -- |
| 207.39 | 0.671 | 12.2 | -- | -- | 0.589 | -- | -- | -0.998 | -- | 30.8 | 18203 | -- | -- |
| 218.3 | 0.69 | 12.2 | -- | -- | -- | -- | -- | -0.75 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.80 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 2 | 81.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 3 | 81.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 6 | 81.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 10 | 82.19 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 11 | 82.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 13 | 82.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 19 |
| 16 | 82.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 20 | 82.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 24 | 82.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 12 |
| 36 | 82.46 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 41 | 82.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 64 | 82.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 82 | 82.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 94 | 82.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 111 | 82.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 112 | 82.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 22 |
| 123 | 82.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 19 |
| 131 | 82.92 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 151 | 82.97 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 13 |
| 165 | 83.00 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 172 | 83.01 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 15 |
| 216 | 83.11 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 225 | 83.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 234 | 83.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 241 | 83.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 283 | 83.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 326 | 83.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 327 | 83.26 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 336 | 83.28 | humidity | 80 | 14400 | > th | dose dependent | sin | 19 | NA |
| 371 | 83.33 | humidity | 90 | 14400 | > th | dose dependent | sin | 0 | NA |
| 377 | 83.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 417 | 83.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 422 | 83.42 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 442 | 83.46 | humidity | 90 | 14400 | > th | dose independent | sin | 16 | NA |
| 443 | 83.46 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 471 | 83.50 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 486 | 83.52 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 491 | 83.52 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 493 | 83.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 525 | 83.56 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 533 | 83.56 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 572 | 83.62 | humidity | 90 | 14400 | < th | dose independent | sin | 18 | NA |
| 601 | 83.65 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 617 | 83.67 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 619 | 83.67 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 667 | 83.73 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 689 | 83.75 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 694 | 83.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 15 |
| 704 | 83.76 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 706 | 83.76 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 732 | 83.79 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 872 | 83.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 875 | 83.89 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 879 | 83.89 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 886 | 83.90 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 906 | 83.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 917 | 83.92 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 919 | 83.92 | humidity | 70 | 43200 | > th | dose dependent | sin | 14 | NA |
| 952 | 83.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 985 | 83.96 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |