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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0181200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytochrome P450-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0401) R2 : 0.132
β1 : 0.863 (0.147) R2dD : 0.0683 R2D : 0.0687
β2 : 0.551 (0.0963) R2dC : 0.0625 R2C : 0.0654
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0472 (0.0856) R2dN8 : 0.000776 R2N8 : -0.00163
σ : 0.754
deviance : 259.25
__
_____
C
peak time of C : 1.48
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
221.73 0.7 3.37 0.751 0.638 1.37 2.14 2.65 0.165 0.819 0.9952 4287 -- --
225.88 0.7 3.31 1.2 0.758 1.04 1.83 -- 0.242 0.281 2.25 5502 -- --
227.95 0.703 3.39 0.709 0.17 1.86 -- 3.41 0.155 1.35 0.7587 6032 -- --
242.02 0.725 3.31 1.17 0.274 1.21 -- -- 0.251 0.261 2.119 6044 -- --
226.82 0.701 3.41 0.444 -- 2.24 -- 5.19 0.135 -- 0.9257 6041 -- --
243.97 0.732 3.35 0.936 0.545 -- 1.93 -- 0.0591 0.866 -- -- -- --
259.25 0.754 3.35 0.863 0.551 -- -- -- 0.0472 1.48 -- -- -- --
245.35 0.73 3.29 1.18 -- 1.41 -- -- 0.29 -- 2.17 6098 -- --
270.11 0.765 3.34 -- 0.447 0.844 -- -- 0.103 1.71 6.613 4478 -- --
277.9 0.779 3.34 0.885 -- -- -- -- 0.0591 -- -- -- -- --
278.89 0.781 3.37 -- 0.567 -- -- -- -0.0489 1.53 -- -- -- --
276.06 0.774 3.32 -- -- 1.05 -- -- 0.163 -- 5.663 6123 -- --
298.57 0.807 3.37 -- -- -- -- -- -0.0392 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 212.50 temperature 20 90 < th dose independent rect. 6 2
3 212.83 temperature 20 90 < th dose dependent rect. 6 1
13 214.43 radiation 1 90 < th dose dependent rect. 6 1
30 216.21 humidity 90 90 > th dose dependent rect. 7 1
41 217.66 radiation 1 4320 < th dose dependent rect. 20 10
47 217.80 radiation 1 4320 < th dose dependent rect. 4 2
52 217.88 radiation 1 14400 < th dose independent rect. 5 2
53 217.93 radiation 1 14400 > th dose independent rect. 5 2
56 218.17 humidity 90 43200 < th dose independent rect. 5 1
58 218.18 radiation 1 14400 < th dose independent rect. 20 11
60 218.19 radiation 1 14400 < th dose independent rect. 23 8
77 218.25 humidity 90 43200 > th dose independent rect. 5 1
80 218.35 humidity 90 43200 < th dose independent rect. 22 1
81 218.35 humidity 90 43200 < th dose independent rect. 21 3
85 218.44 radiation 1 4320 < th dose independent rect. 17 13
86 218.44 humidity 90 43200 > th dose dependent rect. 5 1
88 218.45 humidity 90 43200 > th dose dependent rect. 22 2
92 218.51 radiation 1 4320 < th dose dependent rect. 17 13
95 218.56 humidity 90 43200 > th dose independent rect. 22 2
99 218.63 radiation 1 4320 > th dose independent rect. 17 13
102 218.68 humidity 90 43200 < th dose independent rect. 17 16
114 218.74 humidity 90 43200 > th dose dependent rect. 21 16
118 218.76 humidity 90 43200 < th dose independent rect. 20 17
120 218.76 humidity 90 43200 < th dose independent rect. 18 19
140 218.79 humidity 90 43200 < th dose independent rect. 12 21
167 218.83 humidity 90 43200 < th dose independent rect. 18 8
168 218.83 humidity 90 43200 > th dose independent rect. 21 16
173 218.83 humidity 90 43200 > th dose dependent rect. 21 12
180 218.84 humidity 90 43200 > th dose independent rect. 20 13
239 218.89 humidity 90 43200 > th dose independent rect. 3 6
246 218.89 humidity 90 43200 > th dose dependent rect. 3 6
256 218.90 humidity 90 43200 < th dose independent sin 15 NA
267 218.90 humidity 90 43200 < th dose independent rect. 20 23
286 218.91 humidity 90 43200 > th dose dependent sin 6 NA
297 218.92 humidity 90 43200 > th dose dependent rect. 3 8
326 218.94 humidity 90 43200 < th dose independent no NA NA
334 218.94 humidity 90 43200 < th dose independent rect. 5 23
349 218.95 humidity 90 43200 < th dose independent rect. 1 23
379 218.97 humidity 90 43200 > th dose independent sin 7 NA
391 218.97 humidity 90 43200 > th dose dependent rect. 3 23
392 218.97 humidity 90 43200 > th dose dependent rect. 10 23
432 219.00 humidity 90 43200 > th dose independent rect. 4 3
441 219.00 humidity 90 43200 > th dose independent rect. 11 22
445 219.00 humidity 90 43200 > th dose dependent no NA NA
468 219.01 humidity 90 43200 > th dose dependent rect. 5 23
469 219.01 humidity 90 43200 > th dose dependent rect. 7 23
593 219.08 humidity 70 720 > th dose independent rect. 19 1
596 219.08 humidity 90 43200 < th dose independent rect. 11 16
663 219.12 humidity 90 43200 < th dose independent sin 6 NA
673 219.12 humidity 90 43200 > th dose independent rect. 2 23
674 219.12 humidity 90 43200 > th dose independent rect. 5 23
675 219.12 humidity 90 43200 > th dose independent rect. 8 23
679 219.13 humidity 90 43200 > th dose independent no NA NA
712 219.15 radiation 1 43200 < th dose independent rect. 16 3
713 219.15 radiation 1 43200 < th dose independent rect. 16 5
736 219.16 radiation 1 43200 > th dose independent rect. 16 3
807 219.20 humidity 90 43200 > th dose independent rect. 1 12
863 219.23 radiation 1 43200 < th dose independent rect. 16 16
905 219.25 radiation 1 43200 > th dose independent rect. 16 17