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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0180800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1070 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.29 (0.0445) R2 : 0.856
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.52 (0.208) R2dC : 0.353 R2C : 0.72
β3 : 1.63 (0.158) R2dE : 0.133 R2E : 0.499
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.253 (0.0929) R2dN8 : 0.00253 R2N8 : 0.00169
σ : 0.826
deviance : 314.57
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_____
C
peak time of C : 10.8
E
wheather : radiation
threshold : 1.87
memory length : 36
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
298.89 0.812 6.27 0.747 3.69 1.49 -1.55 2.11 0.304 10.9 2.44 30 -- --
304.82 0.813 6.2 0.735 3.78 1.54 0.457 -- 0.383 10.9 2.02 36 -- --
300.24 0.807 6.28 0.704 3.59 1.66 -- 1.28 0.286 10.7 1.91 37 -- --
303.56 0.811 6.27 0.658 3.61 1.58 -- -- 0.33 10.9 1.91 36 -- --
520.01 1.06 6.42 0.0993 -- 3.69 -- 0.633 0.305 -- 1.04 13 -- --
358.25 0.887 6.22 0.653 5.39 -- 0.799 -- 0.397 11.2 -- -- -- --
360.98 0.89 6.22 0.685 5.39 -- -- -- 0.4 11.2 -- -- -- --
497.19 1.04 6.38 0.561 -- 3.95 -- -- 0.217 -- 1.586 30 -- --
314.57 0.826 6.29 -- 3.52 1.63 -- -- 0.253 10.8 1.87 36 -- --
2175.77 2.18 6.35 0.552 -- -- -- -- 0.351 -- -- -- -- --
373.36 0.904 6.23 -- 5.38 -- -- -- 0.324 11.2 -- -- -- --
501.28 1.04 6.38 -- -- 3.94 -- -- 0.203 -- 1.061 32 -- --
2183.82 2.18 6.36 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 286.89 temperature 20 10 > th dose dependent rect. 20 22
2 287.65 temperature 10 90 > th dose dependent rect. 19 23
11 291.48 temperature 15 270 > th dose dependent rect. 19 21
17 292.54 temperature 15 10 > th dose dependent rect. 5 13
25 295.22 temperature 10 720 > th dose dependent rect. 4 3
40 296.98 temperature 20 10 > th dose dependent rect. 5 21
63 299.75 temperature 15 90 > th dose dependent rect. 4 22
96 302.85 temperature 10 270 > th dose dependent rect. 19 12
97 302.88 radiation 1 30 < th dose independent rect. 23 23
98 302.89 radiation 1 30 < th dose independent rect. 15 17
107 302.98 radiation 1 30 > th dose independent rect. 5 13
120 303.20 temperature 20 10 > th dose dependent rect. 11 23
137 303.61 radiation 1 30 > th dose independent no NA NA
201 303.94 radiation 1 30 < th dose independent no NA NA
212 304.04 radiation 1 30 < th dose independent rect. 7 23
214 304.11 radiation 1 30 < th dose independent rect. 17 23
227 304.91 temperature 30 270 < th dose dependent rect. 23 21
229 304.96 temperature 30 10 < th dose dependent rect. 7 23
236 305.39 wind 7 720 < th dose dependent rect. 4 3
240 305.58 radiation 10 10 < th dose dependent rect. 7 23
241 305.61 temperature 15 10 > th dose dependent no NA NA
250 305.73 radiation 1 30 > th dose independent rect. 17 23
266 306.51 radiation 1 30 > th dose independent rect. 11 23
285 307.17 radiation 10 10 < th dose dependent rect. 10 23
298 307.45 radiation 1 720 > th dose independent rect. 4 2
311 307.55 temperature 10 270 > th dose dependent rect. 10 13
312 307.55 temperature 30 10 < th dose dependent rect. 23 23
321 307.66 temperature 25 4320 < th dose dependent rect. 21 1
325 307.74 radiation 40 4320 < th dose dependent rect. 18 5
327 307.75 temperature 10 4320 > th dose dependent rect. 21 1
331 307.78 radiation 1 4320 > th dose independent rect. 5 1
332 307.81 radiation 1 4320 < th dose independent rect. 3 3
337 307.87 radiation 1 4320 < th dose independent rect. 19 11
350 307.90 temperature 10 720 > th dose dependent rect. 20 3
356 307.95 radiation 1 720 > th dose independent rect. 18 13
375 308.15 radiation 10 30 < th dose dependent rect. 23 23
399 308.40 temperature 20 10 > th dose dependent rect. 9 23
421 308.66 temperature 20 10 > th dose dependent rect. 1 23
438 308.85 temperature 25 4320 > th dose independent rect. 21 1
439 308.87 radiation 10 10 < th dose dependent rect. 15 23
440 308.89 radiation 10 10 < th dose dependent no NA NA
448 308.95 temperature 25 4320 < th dose independent rect. 21 1
450 308.98 radiation 10 10 < th dose dependent rect. 13 23
451 309.00 radiation 1 30 > th dose independent rect. 9 23
468 309.23 temperature 30 4320 < th dose dependent rect. 6 1
472 309.27 temperature 15 4320 > th dose dependent rect. 6 1
486 309.35 temperature 25 10 < th dose dependent rect. 2 20
526 309.65 temperature 25 4320 < th dose dependent rect. 20 11
610 310.18 temperature 20 14400 < th dose dependent rect. 5 1
613 310.21 wind 1 720 > th dose independent rect. 19 4
618 310.21 temperature 30 10 < th dose dependent rect. 13 23
620 310.23 temperature 25 4320 < th dose dependent sin 13 NA
684 310.54 temperature 30 10 < th dose dependent rect. 15 23
697 310.59 temperature 10 4320 > th dose dependent rect. 19 12
710 310.65 radiation 40 4320 < th dose dependent rect. 18 12
899 310.99 temperature 30 10 < th dose dependent no NA NA
912 311.01 radiation 10 30 < th dose dependent rect. 17 23
935 311.07 radiation 1 43200 > th dose independent rect. 18 11
964 311.15 radiation 1 43200 > th dose independent rect. 18 1
986 311.18 temperature 10 4320 > th dose dependent sin 12 NA