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Os05g0180600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.42 (0.0171) R2 : 0.327
β1 : 0.901 (0.0626) R2dD : 0.317 R2D : 0.244
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.236 (0.0365) R2dN8 : 0.0829 R2N8 : 0.00986
σ : 0.321
deviance : 47.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.28 0.245 9.37 1.16 0.472 0.402 0.205 1.5 0.245 11.4 21.3 2075 -- --
31.97 0.263 9.42 0.764 0.46 0.317 0.0339 -- 0.175 11.4 21.8 2148 -- --
27.22 0.243 9.37 1.2 0.473 0.353 -- 1.43 0.251 11.4 21.76 2105 -- --
31.87 0.263 9.43 0.787 0.474 0.279 -- -- 0.153 11.5 21.9 2126 -- --
40.05 0.295 9.38 1.2 -- 0.361 -- 1.5 0.256 -- 21.7 1673 -- --
34.33 0.275 9.41 0.909 0.45 -- 0.0986 -- 0.241 11.6 -- -- -- --
34.37 0.275 9.41 0.913 0.45 -- -- -- 0.241 11.5 -- -- -- --
43.25 0.308 9.43 0.839 -- 0.241 -- -- 0.168 -- 22.1 1638 -- --
35.1 0.276 9.48 -- 0.465 0.676 -- -- -0.0959 11.6 22.07 47520 -- --
47.08 0.321 9.42 0.901 -- -- -- -- 0.236 -- -- -- -- --
56.33 0.351 9.43 -- 0.44 -- -- -- 0.139 11.4 -- -- -- --
48.64 0.325 9.49 -- -- 0.652 -- -- -0.0915 -- 22.02 47520 -- --
68.48 0.386 9.44 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.96 temperature 10.0 30 > th dose dependent rect. 5 15
4 24.23 temperature 10.0 270 > th dose dependent rect. 3 15
19 25.45 humidity 50.0 270 > th dose independent rect. 7 20
22 25.52 temperature 10.0 270 > th dose dependent rect. 3 4
23 25.56 temperature 10.0 270 > th dose dependent rect. 2 6
24 25.57 humidity 80.0 270 > th dose independent rect. 3 4
25 25.63 temperature 30.0 270 < th dose independent rect. 7 20
29 25.71 radiation 10.0 270 < th dose independent rect. 17 10
30 25.76 radiation 10.0 270 < th dose dependent rect. 17 10
35 25.83 wind 9.0 270 < th dose independent rect. 3 15
41 25.94 temperature 30.0 90 < th dose independent rect. 9 20
42 25.94 humidity 50.0 270 > th dose dependent rect. 3 4
52 26.00 temperature 30.0 270 < th dose independent rect. 17 10
55 26.02 humidity 60.0 270 > th dose independent rect. 17 10
58 26.05 temperature 15.0 270 > th dose independent rect. 3 15
64 26.05 temperature 30.0 270 < th dose dependent rect. 7 7
69 26.07 wind 9.0 270 < th dose dependent rect. 3 4
70 26.08 wind 7.0 270 < th dose independent rect. 3 4
74 26.10 radiation 20.0 270 < th dose independent rect. 3 4
83 26.13 temperature 30.0 270 < th dose independent rect. 7 8
87 26.14 temperature 10.0 270 > th dose independent rect. 3 4
89 26.14 temperature 30.0 270 < th dose independent rect. 3 4
90 26.14 humidity 50.0 270 > th dose independent rect. 3 4
93 26.14 atmosphere 995.0 270 > th dose independent rect. 3 4
94 26.14 atmosphere 1015.0 270 < th dose independent rect. 3 4
97 26.14 temperature 10.0 270 > th dose independent rect. 7 20
108 26.22 precipitation 0.1 270 < th dose independent rect. 18 9
111 26.22 precipitation 0.1 270 < th dose dependent rect. 18 9
113 26.24 precipitation 0.1 270 < th dose independent rect. 7 20
114 26.24 precipitation 0.1 270 < th dose dependent rect. 7 20
115 26.25 precipitation 0.1 270 < th dose independent rect. 3 4
116 26.25 precipitation 0.1 270 < th dose dependent rect. 3 4
124 26.28 atmosphere 995.0 270 > th dose independent rect. 18 9
127 26.29 wind 9.0 270 < th dose independent rect. 18 9
128 26.29 temperature 10.0 270 > th dose independent rect. 18 9
134 26.29 atmosphere 1015.0 270 < th dose independent rect. 3 15
137 26.30 radiation 40.0 270 < th dose dependent rect. 3 4
144 26.33 atmosphere 995.0 270 > th dose independent rect. 7 20
149 26.35 radiation 10.0 270 < th dose dependent rect. 8 19
151 26.37 precipitation 0.1 270 < th dose independent rect. 3 15
152 26.37 precipitation 0.1 270 < th dose dependent rect. 3 15
159 26.41 radiation 1.0 90 < th dose dependent sin 12 NA
163 26.44 wind 7.0 90 < th dose independent rect. 5 14
164 26.44 wind 9.0 90 < th dose dependent rect. 5 14
169 26.48 humidity 50.0 270 > th dose dependent rect. 2 6
172 26.50 radiation 1.0 90 < th dose independent sin 12 NA
184 26.52 humidity 50.0 270 > th dose independent rect. 7 7
192 26.53 wind 9.0 270 < th dose independent rect. 14 17
195 26.54 temperature 15.0 90 > th dose independent rect. 5 14
225 26.64 atmosphere 1000.0 90 > th dose independent rect. 9 19
229 26.65 wind 9.0 270 < th dose independent rect. 7 20
236 26.67 wind 3.0 90 < th dose independent rect. 5 4
242 26.68 temperature 10.0 270 > th dose independent rect. 7 7
243 26.68 atmosphere 995.0 270 > th dose independent rect. 7 7
244 26.68 atmosphere 1015.0 270 < th dose independent rect. 7 7
245 26.68 temperature 15.0 30 > th dose independent rect. 20 9
246 26.68 temperature 10.0 270 > th dose independent rect. 14 17
251 26.68 atmosphere 995.0 90 > th dose dependent rect. 9 19
253 26.69 precipitation 0.1 270 < th dose independent rect. 7 7
256 26.69 precipitation 0.1 270 < th dose dependent rect. 7 7
263 26.71 radiation 1.0 90 > th dose independent sin 12 NA
280 26.74 atmosphere 1000.0 30 > th dose independent rect. 20 9
286 26.74 temperature 10.0 720 > th dose dependent rect. 20 20
313 26.81 temperature 30.0 270 < th dose dependent rect. 9 2
330 26.86 radiation 10.0 270 < th dose independent rect. 4 2
336 26.88 precipitation 0.1 270 < th dose independent rect. 14 17
339 26.88 wind 9.0 270 < th dose dependent rect. 3 15
340 26.88 precipitation 0.1 270 < th dose dependent rect. 14 17
341 26.89 wind 7.0 270 < th dose independent rect. 4 2
347 26.89 atmosphere 995.0 270 > th dose dependent rect. 7 7
349 26.89 temperature 30.0 720 < th dose dependent rect. 24 11
358 26.91 atmosphere 1010.0 270 < th dose independent rect. 4 2
364 26.92 radiation 20.0 270 < th dose dependent rect. 4 2
367 26.92 temperature 30.0 720 < th dose dependent rect. 24 5
371 26.93 temperature 10.0 270 > th dose independent rect. 4 2
373 26.93 temperature 30.0 270 < th dose independent rect. 4 2
374 26.93 humidity 50.0 270 > th dose independent rect. 4 2
377 26.93 atmosphere 995.0 270 > th dose independent rect. 4 2
385 26.93 temperature 10.0 270 > th dose independent rect. 6 22
391 26.94 wind 1.0 270 > th dose independent rect. 7 20
396 26.95 precipitation 0.1 270 < th dose independent rect. 4 2
398 26.95 precipitation 0.1 270 < th dose dependent rect. 4 2
420 26.96 radiation 40.0 270 < th dose dependent rect. 2 6
428 26.97 temperature 30.0 90 < th dose dependent rect. 9 20
437 26.99 wind 9.0 4320 < th dose independent rect. 6 3
456 27.00 temperature 10.0 720 > th dose dependent rect. 23 9
477 27.01 atmosphere 1015.0 90 < th dose independent rect. 5 14
499 27.04 wind 9.0 270 < th dose independent rect. 7 7
519 27.07 temperature 15.0 30 > th dose independent rect. 9 20
523 27.08 wind 1.0 270 > th dose independent rect. 7 7
558 27.11 wind 3.0 43200 < th dose dependent rect. 23 4
560 27.11 temperature 10.0 270 > th dose dependent rect. 18 8
572 27.13 precipitation 0.1 90 < th dose independent rect. 5 14
581 27.13 precipitation 0.1 90 < th dose dependent rect. 5 14
601 27.15 atmosphere 995.0 30 > th dose dependent rect. 11 18
638 27.20 atmosphere 995.0 270 > th dose independent rect. 3 15
698 27.25 temperature 15.0 720 > th dose dependent sin 6 NA
713 27.26 temperature 10.0 10 > th dose dependent rect. 20 9
740 27.28 temperature 10.0 90 > th dose dependent rect. 20 8
743 27.28 temperature 10.0 720 > th dose dependent rect. 21 12
763 27.29 wind 1.0 270 > th dose independent rect. 8 18
766 27.29 temperature 25.0 720 < th dose dependent sin 5 NA
776 27.29 temperature 25.0 720 < th dose dependent rect. 24 18
779 27.30 radiation 40.0 270 < th dose independent rect. 14 17
814 27.33 wind 1.0 270 > th dose independent rect. 18 9
865 27.35 atmosphere 995.0 270 > th dose independent rect. 14 17
868 27.35 atmosphere 995.0 270 > th dose dependent rect. 3 4
908 27.38 temperature 25.0 10 > th dose independent rect. 5 15
997 27.43 radiation 1.0 90 > th dose independent rect. 17 15