Os05g0180300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os05g0180300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.08 | 0.491 | 9 | 0.528 | 0.929 | -1.17 | -0.141 | 4.03 | -0.0936 | 9.13 | 27.42 | 6136 | -- | -- |
| 107.24 | 0.482 | 9.07 | 1.12 | 1.01 | -2.09 | 0.0967 | -- | 0.0569 | 8.64 | 19.07 | 45104 | -- | -- |
| 108.84 | 0.486 | 9 | 0.577 | 0.962 | -1.21 | -- | 4.42 | -0.114 | 9.11 | 27.7 | 5998 | -- | -- |
| 106.84 | 0.481 | 9.06 | 1.07 | 1 | -2.04 | -- | -- | 0.0866 | 8.64 | 19.1 | 44839 | -- | -- |
| 154.83 | 0.58 | 9 | 0.628 | -- | -1.35 | -- | 4.4 | -0.0208 | -- | 27.5 | 6405 | -- | -- |
| 148.47 | 0.571 | 9.21 | -1.13 | 0.981 | -- | -0.127 | -- | -0.686 | 8.91 | -- | -- | -- | -- |
| 148.52 | 0.571 | 9.21 | -1.14 | 0.981 | -- | -- | -- | -0.685 | 8.93 | -- | -- | -- | -- |
| 158.54 | 0.586 | 9.06 | 1.19 | -- | -2.1 | -- | -- | 0.104 | -- | 19 | 45352 | -- | -- |
| 115.88 | 0.501 | 9.07 | -- | 0.989 | -1.36 | -- | -- | -0.0635 | 8.57 | 20.3 | 41001 | -- | -- |
| 203.57 | 0.667 | 9.24 | -1.14 | -- | -- | -- | -- | -0.679 | -- | -- | -- | -- | -- |
| 182.52 | 0.632 | 9.18 | -- | 0.979 | -- | -- | -- | -0.559 | 9.02 | -- | -- | -- | -- |
| 165.51 | 0.599 | 9.12 | -- | -- | -1.4 | -- | -- | -0.175 | -- | 19.9 | 21050 | -- | -- |
| 237.62 | 0.72 | 9.21 | -- | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 2 | 105.18 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 18 |
| 3 | 105.18 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 20 |
| 4 | 105.19 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 16 |
| 6 | 105.19 | temperature | 20 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 7 | 105.19 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 22 |
| 9 | 105.20 | temperature | 20 | 43200 | < th | dose dependent | rect. | 14 | 18 |
| 24 | 105.21 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 22 |
| 55 | 105.24 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 70 | 105.24 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 92 | 105.26 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 11 |
| 103 | 105.27 | temperature | 20 | 43200 | < th | dose dependent | sin | 14 | NA |
| 141 | 105.30 | temperature | 20 | 43200 | < th | dose dependent | sin | 2 | NA |
| 157 | 105.31 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 199 | 105.35 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 268 | 105.42 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 272 | 105.42 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 308 | 105.47 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 313 | 105.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 322 | 105.50 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 347 | 105.54 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 385 | 105.65 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 395 | 105.71 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 407 | 105.76 | temperature | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 444 | 106.00 | temperature | 20 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 456 | 106.15 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 462 | 106.18 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 472 | 106.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 475 | 106.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 476 | 106.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 479 | 106.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 21 |
| 482 | 106.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 486 | 106.26 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 520 | 106.35 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 524 | 106.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 532 | 106.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 14 |
| 537 | 106.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 546 | 106.41 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 595 | 106.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 637 | 106.55 | radiation | 1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 638 | 106.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 647 | 106.57 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 21 |
| 679 | 106.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 711 | 106.67 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 716 | 106.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 20 |
| 721 | 106.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 22 |
| 726 | 106.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 738 | 106.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 780 | 106.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 796 | 106.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 815 | 106.74 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 831 | 106.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 841 | 106.77 | temperature | 20 | 43200 | < th | dose independent | sin | 0 | NA |
| 890 | 106.83 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 939 | 106.87 | temperature | 20 | 43200 | > th | dose independent | sin | 1 | NA |
| 990 | 106.92 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 17 |