Os05g0180000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0180000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 458.84 | 1.01 | 7.85 | 2.76 | 3.31 | -3.96 | 0.201 | 5.79 | 1.25 | 22.1 | 77.92 | 1463 | 23 | -- |
| 475.1 | 1.02 | 7.85 | 2.32 | 3.33 | -3.01 | 0.166 | -- | 1.27 | 22 | 77 | 1463 | 21.4 | -- |
| 458.77 | 0.998 | 7.85 | 2.75 | 3.29 | -4.08 | -- | 6.1 | 1.25 | 22 | 77.92 | 1484 | 23.1 | -- |
| 472.15 | 1.01 | 7.93 | 2.21 | 3.35 | -2.96 | -- | -- | 1.16 | 22.1 | 77 | 1450 | 21.6 | -- |
| 587.56 | 1.13 | 7.89 | 1.7 | -- | -3.39 | -- | 0.237 | 0.911 | -- | 124.7 | 949 | 3.84 | -- |
| 587.56 | 1.14 | 7.98 | 1.7 | 3.39 | -- | -0.237 | -- | 0.911 | 22.1 | -- | -- | -- | -- |
| 587.78 | 1.14 | 7.98 | 1.71 | 3.39 | -- | -- | -- | 0.911 | 22.1 | -- | -- | -- | -- |
| 587.78 | 1.13 | 7.89 | 1.71 | -- | -3.39 | -- | -- | 0.912 | -- | 139.1 | 954 | 3.9 | -- |
| 584.84 | 1.13 | 7.94 | -- | 3.39 | -2.3 | -- | -- | 1.07 | 22.1 | 80.66 | 1460 | 19 | -- |
| 1279.93 | 1.67 | 7.89 | 1.75 | -- | -- | -- | -- | 0.915 | -- | -- | -- | -- | -- |
| 664.44 | 1.21 | 8.02 | -- | 3.39 | -- | -- | -- | 0.721 | 22.1 | -- | -- | -- | -- |
| 664.44 | 1.2 | 7.93 | -- | -- | -3.39 | -- | -- | 0.721 | -- | 202.5 | 1003 | 4.27 | -- |
| 1360.62 | 1.72 | 7.93 | -- | -- | -- | -- | -- | 0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 466.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 11 | 468.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 27 | 472.26 | radiation | 1 | 30 | > th | dose independent | rect. | 7 | 23 |
| 35 | 473.13 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 57 | 475.67 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 136 | 485.94 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 144 | 486.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 152 | 487.98 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 159 | 488.30 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 163 | 488.37 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 14 |
| 186 | 489.29 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 192 | 489.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 199 | 490.15 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 204 | 490.46 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 206 | 490.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 211 | 490.81 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 238 | 492.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 240 | 492.85 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 251 | 493.15 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 257 | 493.36 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 265 | 493.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 275 | 493.99 | radiation | 1 | 10 | > th | dose independent | rect. | 9 | 21 |
| 301 | 494.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 313 | 495.25 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 318 | 495.36 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 320 | 495.41 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 20 |
| 397 | 496.52 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 424 | 497.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 431 | 497.11 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 448 | 497.37 | humidity | 80 | 10 | < th | dose independent | sin | 23 | NA |
| 457 | 497.46 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 12 |
| 458 | 497.49 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 470 | 497.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 481 | 497.82 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 22 |
| 542 | 498.68 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 559 | 498.88 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 562 | 498.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 573 | 499.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 590 | 499.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 599 | 499.41 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 600 | 499.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 609 | 499.54 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 621 | 499.68 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 623 | 499.70 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 630 | 499.76 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 699 | 500.49 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 12 |
| 741 | 501.04 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 10 |
| 784 | 501.50 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 817 | 501.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 842 | 502.27 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 851 | 502.38 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 868 | 502.53 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 936 | 503.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 952 | 503.18 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 960 | 503.21 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 1000 | 503.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |