Os05g0178900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PRP38 family protein.
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Os05g0178900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PRP38 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.14 | 0.189 | 9.42 | -0.11 | 0.515 | 0.605 | 0.0994 | 0.869 | 0.124 | 10.4 | 20.8 | 1376 | -- | -- |
| 17.64 | 0.196 | 9.45 | -0.203 | 0.484 | 0.457 | 0.146 | -- | 0.101 | 9.94 | 21.4 | 1434 | -- | -- |
| 15.73 | 0.185 | 9.43 | -0.0829 | 0.517 | 0.534 | -- | 0.731 | 0.115 | 10.4 | 21.49 | 1360 | -- | -- |
| 16.98 | 0.192 | 9.45 | -0.259 | 0.534 | 0.461 | -- | -- | 0.0747 | 10.3 | 21.74 | 1245 | -- | -- |
| 31.29 | 0.261 | 9.43 | -0.0486 | -- | 0.527 | -- | 0.852 | 0.137 | -- | 21.5 | 1533 | -- | -- |
| 23.85 | 0.229 | 9.42 | -0.0752 | 0.501 | -- | 0.0588 | -- | 0.21 | 10.2 | -- | -- | -- | -- |
| 23.87 | 0.229 | 9.42 | -0.0729 | 0.501 | -- | -- | -- | 0.21 | 10.2 | -- | -- | -- | -- |
| 31.99 | 0.265 | 9.45 | -0.175 | -- | 0.342 | -- | -- | 0.12 | -- | 21.7 | 1548 | -- | -- |
| 18.33 | 0.199 | 9.45 | -- | 0.566 | 0.375 | -- | -- | 0.105 | 10.3 | 22.1 | 1085 | -- | -- |
| 39.12 | 0.292 | 9.43 | -0.0803 | -- | -- | -- | -- | 0.209 | -- | -- | -- | -- | -- |
| 24.01 | 0.229 | 9.42 | -- | 0.501 | -- | -- | -- | 0.219 | 10.2 | -- | -- | -- | -- |
| 31.49 | 0.262 | 9.45 | -- | -- | 0.34 | -- | -- | 0.132 | -- | 22.08 | 1536 | -- | -- |
| 39.29 | 0.293 | 9.43 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.53 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 2 | 14.79 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 3 | 15.13 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 8 | 15.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 10 | 15.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 11 | 15.90 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 12 | 15.93 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 13 | 15.97 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 14 | 15.99 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 15 | 15.99 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 17 | 16.01 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 18 | 16.01 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 24 | 16.06 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 35 | 16.11 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 42 | 16.17 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 44 | 16.18 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 45 | 16.19 | wind | 3 | 14400 | < th | dose independent | sin | 8 | NA |
| 50 | 16.20 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 53 | 16.21 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 55 | 16.21 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 15 |
| 65 | 16.23 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 66 | 16.23 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 67 | 16.23 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 112 | 16.33 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 117 | 16.33 | wind | 3 | 14400 | < th | dose dependent | sin | 8 | NA |
| 126 | 16.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 136 | 16.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 140 | 16.38 | wind | 3 | 14400 | > th | dose independent | sin | 8 | NA |
| 148 | 16.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 175 | 16.43 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 177 | 16.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 178 | 16.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 195 | 16.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 227 | 16.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 243 | 16.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 259 | 16.56 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 271 | 16.58 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 281 | 16.59 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 284 | 16.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 302 | 16.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 312 | 16.61 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 328 | 16.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 349 | 16.66 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 379 | 16.69 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 392 | 16.70 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 443 | 16.75 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 543 | 16.86 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 568 | 16.87 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 584 | 16.89 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 747 | 17.00 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 856 | 17.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 858 | 17.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 859 | 17.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 877 | 17.09 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 890 | 17.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 983 | 17.16 | humidity | 80 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 1000 | 17.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 20 |