Os05g0176600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0176600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.78 | 0.269 | 10.4 | -0.493 | 0.611 | -0.695 | -0.376 | 0.766 | -0.00436 | 1.64 | 23.92 | 1229 | -- | -- |
| 33 | 0.268 | 10.4 | -0.697 | 0.628 | -0.653 | -0.311 | -- | -0.0571 | 1.44 | 23.75 | 1128 | -- | -- |
| 33.32 | 0.269 | 10.4 | -0.51 | 0.614 | -0.703 | -- | 0.667 | -0.011 | 1.55 | 23.91 | 1196 | -- | -- |
| 33.35 | 0.269 | 10.4 | -0.687 | 0.633 | -0.699 | -- | -- | -0.114 | 0.902 | 25.29 | 1012 | -- | -- |
| 41.03 | 0.3 | 10.4 | -0.585 | -- | -0.967 | -- | 1.1 | -0.00118 | -- | 23.91 | 1196 | -- | -- |
| 45.98 | 0.318 | 10.4 | -0.9 | 0.494 | -- | -0.439 | -- | -0.16 | 1.71 | -- | -- | -- | -- |
| 46.75 | 0.32 | 10.4 | -0.886 | 0.494 | -- | -- | -- | -0.158 | 1.72 | -- | -- | -- | -- |
| 41.74 | 0.302 | 10.4 | -0.731 | -- | -0.888 | -- | -- | -0.0447 | -- | 23.91 | 1196 | -- | -- |
| 44.75 | 0.312 | 10.4 | -- | 0.63 | -0.798 | -- | -- | 0.0601 | 1.55 | 23.2 | 1198 | -- | -- |
| 61.62 | 0.367 | 10.4 | -0.865 | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
| 67.41 | 0.384 | 10.4 | -- | 0.478 | -- | -- | -- | -0.0592 | 1.66 | -- | -- | -- | -- |
| 51.13 | 0.334 | 10.4 | -- | -- | -1.31 | -- | -- | 0.108 | -- | 16 | 26274 | -- | -- |
| 81.37 | 0.421 | 10.4 | -- | -- | -- | -- | -- | -0.0507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 16 | 32.90 | temperature | 25 | 1440 | > th | dose dependent | sin | 2 | NA |
| 117 | 33.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 138 | 33.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 153 | 33.11 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 161 | 33.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 173 | 33.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 252 | 33.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 283 | 33.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 313 | 33.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 316 | 33.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 322 | 33.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 331 | 33.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 390 | 33.78 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 409 | 33.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 421 | 33.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 436 | 33.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 451 | 33.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 463 | 33.87 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 20 |
| 478 | 33.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 546 | 33.95 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 566 | 33.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 568 | 33.97 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 622 | 34.02 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 751 | 34.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 858 | 34.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 941 | 34.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |