Os05g0176000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Fibrillarin family protein.
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Os05g0176000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Fibrillarin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.68 | 0.603 | 10.6 | 0.537 | 1.73 | -0.518 | 1.3 | -3.55 | -0.348 | 17.2 | 20 | 5848 | -- | -- |
| 173.84 | 0.614 | 10.4 | 0.719 | 1.69 | 0.641 | 1.34 | -- | -0.254 | 17.1 | 16 | 14743 | -- | -- |
| 168.64 | 0.605 | 10.6 | 0.516 | 1.74 | -0.494 | -- | -3.54 | -0.351 | 17.2 | 20 | 5719 | -- | -- |
| 177.93 | 0.621 | 10.4 | 0.698 | 1.74 | 0.704 | -- | -- | -0.286 | 17.1 | 16.1 | 14207 | -- | -- |
| 326.41 | 0.841 | 10.6 | 0.511 | -- | -0.57 | -- | -3.51 | -0.371 | -- | 20 | 5690 | -- | -- |
| 180.24 | 0.629 | 10.4 | 1.16 | 1.73 | -- | 1.33 | -- | -0.164 | 17.2 | -- | -- | -- | -- |
| 184.65 | 0.636 | 10.4 | 1.16 | 1.74 | -- | -- | -- | -0.158 | 17.2 | -- | -- | -- | -- |
| 245.09 | 0.729 | 10.5 | 0.764 | -- | 1.29 | -- | -- | -0.463 | -- | 27.5 | 357 | -- | -- |
| 184.08 | 0.632 | 10.5 | -- | 1.74 | 1.03 | -- | -- | -0.472 | 17.1 | 16 | 47520 | -- | -- |
| 342.48 | 0.865 | 10.4 | 1.1 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 220.19 | 0.694 | 10.4 | -- | 1.72 | -- | -- | -- | -0.287 | 17.2 | -- | -- | -- | -- |
| 262.4 | 0.754 | 10.5 | -- | -- | 1.39 | -- | -- | -0.518 | -- | 27.51 | 355 | -- | -- |
| 374.38 | 0.903 | 10.4 | -- | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.90 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 2 | 158.87 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 4 | 161.40 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 5 | 161.41 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 6 | 161.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 7 | 161.43 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 8 | 161.45 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 9 | 161.45 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 10 | 161.49 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 23 | 162.44 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 29 | 162.73 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 30 | 162.75 | wind | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 35 | 162.89 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 36 | 162.90 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 38 | 163.03 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 49 | 163.37 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 52 | 163.40 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 66 | 163.57 | wind | 1.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 68 | 163.62 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 72 | 163.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 10 |
| 73 | 163.68 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 78 | 163.77 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 80 | 163.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 84 | 163.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 90 | 163.90 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 120 | 164.07 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 143 | 164.20 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 168 | 164.32 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 169 | 164.34 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 190 | 164.43 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 197 | 164.47 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 213 | 164.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 246 | 164.68 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 267 | 164.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 269 | 164.76 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 278 | 164.81 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 281 | 164.82 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 285 | 164.84 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 378 | 165.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 379 | 165.29 | wind | 1.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 392 | 165.35 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 397 | 165.35 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 22 | 11 |
| 399 | 165.36 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 408 | 165.40 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 436 | 165.49 | wind | 7.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 460 | 165.62 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 476 | 165.66 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 487 | 165.69 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 492 | 165.71 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 505 | 165.73 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 507 | 165.74 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 512 | 165.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 550 | 165.89 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 11 |
| 559 | 165.91 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 570 | 165.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 590 | 165.99 | wind | 9.0 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 617 | 166.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 641 | 166.12 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 663 | 166.17 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 674 | 166.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 678 | 166.19 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 695 | 166.23 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 699 | 166.24 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 713 | 166.27 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 722 | 166.28 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 724 | 166.28 | wind | 3.0 | 14400 | < th | dose dependent | sin | 6 | NA |
| 725 | 166.28 | wind | 7.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 728 | 166.30 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 736 | 166.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 751 | 166.34 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 18 | 15 |
| 760 | 166.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 789 | 166.42 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 793 | 166.43 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 801 | 166.45 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 803 | 166.45 | temperature | 15.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 825 | 166.49 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 9 |
| 827 | 166.49 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 9 |
| 837 | 166.51 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 844 | 166.52 | wind | 7.0 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 861 | 166.55 | wind | 5.0 | 90 | < th | dose independent | rect. | 17 | 15 |
| 877 | 166.57 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 889 | 166.59 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 916 | 166.64 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 920 | 166.65 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 922 | 166.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 926 | 166.65 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 953 | 166.69 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 994 | 166.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 4 |
| 998 | 166.74 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 999 | 166.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 4 |