Os05g0175800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0175800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 304.68 | 0.82 | 4.4 | 1.01 | 0.328 | 0.916 | 0.127 | 1.9 | -0.312 | 8.84 | 21.48 | 858 | -- | -- |
| 313.11 | 0.824 | 4.47 | 0.512 | 0.178 | 0.812 | -0.384 | -- | -0.488 | 8.44 | 22 | 1355 | -- | -- |
| 304.73 | 0.813 | 4.4 | 0.995 | 0.327 | 0.914 | -- | 1.85 | -0.315 | 8.82 | 21.49 | 857 | -- | -- |
| 313.94 | 0.825 | 4.47 | 0.55 | 0.198 | 0.775 | -- | -- | -0.458 | 8.68 | 22.39 | 1338 | -- | -- |
| 307.37 | 0.817 | 4.4 | 1.01 | -- | 0.919 | -- | 1.91 | -0.317 | -- | 21.8 | 1361 | -- | -- |
| 336.24 | 0.86 | 4.41 | 0.828 | 0.184 | -- | -0.565 | -- | -0.193 | 7.98 | -- | -- | -- | -- |
| 337.18 | 0.86 | 4.41 | 0.811 | 0.186 | -- | -- | -- | -0.193 | 7.69 | -- | -- | -- | -- |
| 315.87 | 0.828 | 4.47 | 0.535 | -- | 0.78 | -- | -- | -0.455 | -- | 22.26 | 1374 | -- | -- |
| 318.64 | 0.831 | 4.48 | -- | 0.188 | 1.03 | -- | -- | -0.527 | 8.84 | 21.4 | 1360 | -- | -- |
| 339.05 | 0.86 | 4.41 | 0.814 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 354.53 | 0.881 | 4.43 | -- | 0.193 | -- | -- | -- | -0.284 | 7.4 | -- | -- | -- | -- |
| 320.69 | 0.834 | 4.49 | -- | -- | 1.03 | -- | -- | -0.528 | -- | 21.49 | 1370 | -- | -- |
| 356.52 | 0.881 | 4.43 | -- | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 303.83 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 3 | 304.86 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 7 | 305.22 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 305.33 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 10 | 305.43 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 12 | 305.44 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 14 | 305.58 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 17 | 305.69 | temperature | 25.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 30 | 306.18 | temperature | 20.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 34 | 306.35 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 43 | 306.69 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 56 | 306.85 | temperature | 10.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 67 | 307.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 100 | 307.59 | temperature | 25.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 113 | 307.73 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 127 | 308.02 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 130 | 308.06 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 135 | 308.14 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 147 | 308.25 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 191 | 308.57 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 198 | 308.61 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 3 |
| 211 | 308.64 | temperature | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 223 | 308.65 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 248 | 308.74 | temperature | 20.0 | 720 | < th | dose independent | rect. | 21 | 5 |
| 268 | 308.79 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 278 | 308.84 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 295 | 308.90 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 302 | 308.93 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 316 | 309.01 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 344 | 309.10 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 21 |
| 363 | 309.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 378 | 309.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 430 | 309.58 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 433 | 309.60 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 440 | 309.64 | temperature | 20.0 | 720 | < th | dose independent | sin | 14 | NA |
| 441 | 309.64 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 463 | 309.77 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 483 | 309.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 16 |
| 487 | 309.87 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 488 | 309.87 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 500 | 309.91 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 502 | 309.93 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 9 |
| 503 | 309.93 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 515 | 309.97 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 516 | 309.97 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 575 | 310.19 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 20 |
| 622 | 310.35 | temperature | 20.0 | 720 | > th | dose independent | sin | 14 | NA |
| 677 | 310.51 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 22 |
| 716 | 310.61 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 734 | 310.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 18 |
| 775 | 310.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 779 | 310.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 21 |
| 814 | 310.90 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 830 | 310.95 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 13 |
| 841 | 310.98 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 843 | 310.98 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 844 | 310.98 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 851 | 311.01 | wind | 3.0 | 720 | < th | dose independent | rect. | 23 | 6 |
| 886 | 311.13 | wind | 3.0 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 924 | 311.22 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 968 | 311.34 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 987 | 311.40 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 994 | 311.43 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 4 |