FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0172800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0292) R2 : 0.671
β1 : -1.34 (0.129) R2dD : 0.127 R2D : -0.0244
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.78 (0.0899) R2dE : 0.307 R2E : 0.332
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.36 (0.557) R2dD*E : 0.152 R2D*E : 0.00198
γ1 : 0.722 (0.0652) R2dN8 : 0.139 R2N8 : 0.268
σ : 0.525
deviance : 127.15
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.82
memory length : 588
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.02
open length of G : 5.75

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.39 0.53 3.37 -1.4 0.133 1.67 0.0651 -6.33 0.714 9.09 19.9 627 3.07 5.77
157.89 0.585 3.27 -0.291 0.134 1.52 -1.14 -- 1.02 9.16 19.03 621 3.08 5.87
127.05 0.525 3.37 -1.34 0.0783 1.73 -- -6.35 0.722 8.87 19.93 596 3.02 5.77
162.63 0.594 3.27 -0.489 0.116 1.52 -- -- 0.971 7.76 18.85 647 2.8 6.12
127.15 0.525 3.37 -1.34 -- 1.78 -- -6.36 0.722 -- 19.82 588 3.02 5.75
200.45 0.664 3.2 -0.184 0.922 -- -1.02 -- 1.24 11 -- -- -- --
204.82 0.67 3.2 -0.225 0.927 -- -- -- 1.24 11 -- -- -- --
162.86 0.594 3.28 -0.463 -- 1.57 -- -- 0.981 -- 18.62 627 3 5.6
168.51 0.605 3.26 -- 0.151 1.46 -- -- 1.04 7.43 18.82 640 2.89 6.06
258.24 0.751 3.22 -0.246 -- -- -- -- 1.23 -- -- -- -- --
206.16 0.672 3.19 -- 0.929 -- -- -- 1.26 11 -- -- -- --
168.61 0.605 3.27 -- -- 1.53 -- -- 1.03 -- 18.47 621 3.03 5.63
259.83 0.752 3.22 -- -- -- -- -- 1.26 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.53 temperature 20 720 > th dose dependent rect. 3 5
2 131.03 temperature 20 720 > th dose dependent rect. 2 7
30 137.48 temperature 20 720 > th dose dependent sin 7 NA
35 138.31 temperature 20 270 > th dose dependent sin 5 NA
36 138.66 temperature 25 10 > th dose dependent sin 5 NA
39 139.03 temperature 25 720 < th dose dependent rect. 2 5
44 139.43 temperature 30 720 < th dose dependent rect. 1 8
172 144.16 temperature 20 720 > th dose independent rect. 3 4
185 144.42 temperature 30 720 < th dose dependent sin 7 NA
197 144.71 temperature 20 720 < th dose independent rect. 3 4
222 145.19 temperature 25 10 > th dose dependent rect. 16 23
223 145.20 temperature 25 10 > th dose dependent rect. 23 21
227 145.26 temperature 25 10 > th dose dependent rect. 5 15
240 145.42 temperature 25 10 > th dose dependent rect. 21 23
261 145.98 temperature 25 10 > th dose dependent rect. 23 23
279 146.33 temperature 25 270 > th dose independent rect. 4 8
301 146.61 temperature 25 10 > th dose dependent rect. 5 20
320 146.72 temperature 25 10 > th dose dependent no NA NA
329 146.78 temperature 25 10 > th dose dependent rect. 14 23
421 147.86 temperature 30 270 < th dose dependent rect. 1 14
431 147.97 temperature 30 270 < th dose dependent sin 4 NA
453 148.38 temperature 25 10 > th dose dependent rect. 5 10
466 148.53 temperature 25 10 > th dose dependent rect. 23 16
595 149.70 temperature 25 10 > th dose dependent rect. 21 18
671 150.60 temperature 25 10 > th dose dependent rect. 8 23
742 151.43 temperature 30 10 < th dose dependent sin 2 NA
764 151.66 temperature 25 90 > th dose independent sin 2 NA