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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0172000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.47 (0.0518) R2 : 0.203
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.19 (0.127) R2dC : 0.146 R2C : 0.139
β3 : -1.54 (0.273) R2dE : 0.0615 R2E : 0.0463
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.269 (0.111) R2dN8 : 0.0127 R2N8 : -0.00315
σ : 0.97
deviance : 433.39
__
_____
C
peak time of C : 14.6
E
wheather : precipitation
threshold : 2.607e-06
memory length : 1747
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
422.1 0.965 3.42 0.713 1.22 0.178 -0.58 -6.17 0.243 14.7 0.2945 1004 -- --
425.25 0.96 3.48 0.614 1.19 -1.22 -0.818 -- 0.287 14.7 0.5485 1741 -- --
423.25 0.958 3.42 0.695 1.22 0.168 -- -6.27 0.244 14.8 0.4989 1004 -- --
426.97 0.962 3.47 0.526 1.18 -1.28 -- -- 0.287 14.7 2.68e-05 1741 -- --
502.02 1.04 3.39 0.664 -- 0.577 -- -6.83 0.215 -- 0.06232 1694 -- --
444.23 0.988 3.49 0.854 1.18 -- -0.8 -- 0.218 14.7 -- -- -- --
446.46 0.989 3.49 0.834 1.18 -- -- -- 0.213 14.7 -- -- -- --
507.51 1.05 3.47 0.498 -- -1.33 -- -- 0.259 -- 0.0002526 1741 -- --
433.39 0.97 3.47 -- 1.19 -1.54 -- -- 0.269 14.6 2.607e-06 1747 -- --
527.05 1.07 3.5 0.784 -- -- -- -- 0.183 -- -- -- -- --
464.8 1.01 3.51 -- 1.16 -- -- -- 0.12 14.7 -- -- -- --
512.46 1.05 3.49 -- -- -1.56 -- -- 0.218 -- 0.299 1741 -- --
543.27 1.09 3.52 -- -- -- -- -- 0.0962 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 410.51 temperature 25.0 270 > th dose independent rect. 10 6
4 413.16 radiation 20.0 90 < th dose dependent rect. 23 16
5 413.29 wind 1.0 90 > th dose independent rect. 23 7
7 413.71 atmosphere 1000.0 270 > th dose independent rect. 10 6
9 414.04 radiation 20.0 90 < th dose dependent rect. 23 12
23 415.47 atmosphere 1005.0 30 < th dose dependent rect. 5 1
36 416.06 wind 1.0 270 > th dose independent rect. 21 8
44 416.77 temperature 10.0 270 > th dose dependent rect. 9 7
46 416.98 wind 1.0 43200 < th dose independent rect. 23 7
47 416.98 radiation 1.0 30 > th dose dependent sin 8 NA
48 417.00 wind 1.0 43200 > th dose independent rect. 24 7
51 417.12 temperature 25.0 10 > th dose independent rect. 10 9
60 417.53 atmosphere 1010.0 270 < th dose independent rect. 9 7
61 417.53 radiation 40.0 30 < th dose dependent sin 8 NA
64 417.61 radiation 20.0 30 < th dose dependent sin 7 NA
67 417.68 temperature 25.0 270 > th dose independent rect. 23 17
73 417.85 temperature 20.0 30 > th dose independent rect. 6 17
77 417.89 precipitation 0.1 270 < th dose independent rect. 17 16
78 417.89 precipitation 0.1 270 < th dose dependent rect. 17 16
79 417.91 wind 1.0 90 > th dose independent rect. 12 18
86 418.11 radiation 10.0 90 < th dose independent rect. 23 17
88 418.13 precipitation 0.1 90 < th dose independent rect. 6 17
90 418.13 precipitation 0.1 90 < th dose dependent rect. 6 17
93 418.19 wind 1.0 43200 < th dose independent rect. 5 2
105 418.41 wind 1.0 43200 < th dose dependent rect. 1 7
113 418.52 wind 1.0 43200 > th dose independent rect. 5 2
115 418.59 precipitation 0.1 720 > th dose independent rect. 21 17
117 418.63 precipitation 0.1 720 > th dose independent rect. 21 20
120 418.68 precipitation 0.1 720 > th dose dependent rect. 20 18
121 418.72 radiation 40.0 10 < th dose independent rect. 12 18
133 418.88 precipitation 0.1 270 < th dose independent rect. 16 18
134 418.88 precipitation 0.1 270 < th dose dependent rect. 16 18
139 418.98 humidity 50.0 90 > th dose independent rect. 6 17
158 419.21 wind 1.0 43200 < th dose dependent rect. 3 5
167 419.36 precipitation 0.1 720 > th dose independent sin 9 NA
170 419.42 atmosphere 1015.0 90 < th dose independent rect. 23 7
172 419.45 precipitation 0.1 720 > th dose independent rect. 19 19
178 419.50 wind 1.0 43200 < th dose dependent rect. 2 9
184 419.56 wind 3.0 4320 < th dose dependent rect. 23 1
186 419.57 precipitation 0.1 720 > th dose independent rect. 19 16
189 419.63 radiation 10.0 30 < th dose independent rect. 23 12
194 419.68 atmosphere 995.0 30 > th dose independent rect. 13 17
200 419.72 wind 7.0 90 < th dose independent rect. 23 7
210 419.84 precipitation 0.1 1440 < th dose independent rect. 17 3
211 419.84 wind 1.0 14400 > th dose dependent rect. 24 1
212 419.84 precipitation 0.1 1440 < th dose dependent rect. 17 3
216 419.86 wind 1.0 43200 < th dose dependent rect. 2 11
219 419.90 precipitation 0.1 270 < th dose independent rect. 6 15
222 419.90 precipitation 0.1 270 < th dose dependent rect. 6 15
228 419.93 temperature 10.0 90 > th dose independent rect. 23 7
229 419.93 temperature 30.0 90 < th dose independent rect. 23 7
230 419.93 humidity 50.0 90 > th dose independent rect. 23 7
233 419.93 atmosphere 995.0 90 > th dose independent rect. 23 7
234 419.93 radiation 20.0 90 < th dose independent rect. 23 7
238 419.93 temperature 10.0 90 > th dose independent rect. 6 17
243 419.96 radiation 1.0 30 > th dose independent rect. 6 7
246 420.01 wind 1.0 43200 < th dose dependent rect. 4 3
249 420.03 radiation 40.0 90 < th dose dependent rect. 23 7
250 420.03 radiation 1.0 720 < th dose dependent rect. 6 11
260 420.11 precipitation 0.1 1440 < th dose independent rect. 19 5
261 420.11 precipitation 0.1 1440 < th dose dependent rect. 19 5
263 420.13 wind 1.0 43200 > th dose independent rect. 3 5
268 420.17 atmosphere 995.0 270 > th dose independent rect. 11 16
277 420.22 wind 1.0 270 > th dose dependent rect. 23 5
303 420.47 atmosphere 1000.0 10 > th dose independent rect. 12 7
314 420.51 radiation 1.0 270 < th dose independent rect. 21 11
324 420.57 temperature 25.0 10 > th dose independent rect. 12 7
325 420.57 precipitation 0.1 1440 > th dose dependent rect. 17 4
330 420.59 precipitation 0.1 270 < th dose independent rect. 15 8
331 420.59 precipitation 0.1 270 < th dose dependent rect. 15 8
342 420.66 precipitation 0.1 1440 > th dose independent rect. 17 3
345 420.66 precipitation 0.1 1440 > th dose dependent rect. 18 17
350 420.69 precipitation 0.1 1440 > th dose dependent rect. 18 13
366 420.77 radiation 1.0 270 < th dose independent rect. 21 18
378 420.82 wind 1.0 43200 < th dose independent rect. 1 12
382 420.83 wind 5.0 10 > th dose dependent rect. 20 4
387 420.84 atmosphere 1010.0 10 < th dose independent rect. 23 20
393 420.87 wind 3.0 4320 > th dose independent rect. 22 2
394 420.87 wind 1.0 270 > th dose independent rect. 6 15
397 420.90 temperature 30.0 90 < th dose dependent rect. 23 7
399 420.91 temperature 10.0 270 > th dose dependent rect. 23 16
406 420.95 wind 1.0 43200 < th dose independent rect. 3 5
416 420.99 wind 3.0 4320 < th dose independent rect. 22 2
432 421.06 wind 5.0 43200 < th dose dependent rect. 24 3
434 421.06 wind 5.0 10 > th dose dependent rect. 20 10
439 421.07 wind 5.0 10 > th dose dependent rect. 20 8
452 421.11 radiation 10.0 30 > th dose independent sin 8 NA
453 421.11 precipitation 0.1 720 > th dose independent rect. 21 14
459 421.13 precipitation 0.1 270 < th dose independent rect. 14 23
460 421.13 precipitation 0.1 270 < th dose dependent rect. 14 23
474 421.19 temperature 10.0 270 > th dose dependent rect. 22 18
480 421.21 precipitation 0.1 720 > th dose independent rect. 21 12
489 421.23 radiation 40.0 10 < th dose independent rect. 23 20
497 421.28 wind 5.0 10 > th dose independent rect. 20 4
500 421.30 temperature 10.0 270 > th dose dependent rect. 17 5
514 421.36 wind 5.0 10 > th dose independent rect. 20 10
522 421.38 wind 9.0 90 < th dose independent rect. 6 17
523 421.38 temperature 10.0 270 > th dose dependent rect. 16 7
529 421.40 wind 5.0 10 > th dose independent rect. 20 8
536 421.43 temperature 10.0 1440 > th dose independent rect. 7 7
539 421.43 atmosphere 995.0 1440 > th dose independent rect. 7 7
540 421.43 temperature 10.0 1440 > th dose independent rect. 14 17
546 421.44 temperature 20.0 270 > th dose dependent rect. 19 1
550 421.47 precipitation 0.1 90 < th dose independent rect. 23 7
552 421.47 precipitation 0.1 1440 < th dose independent rect. 18 21
553 421.47 precipitation 0.1 90 < th dose dependent rect. 23 7
555 421.47 precipitation 0.1 1440 < th dose dependent rect. 18 21
556 421.48 atmosphere 1015.0 90 < th dose independent rect. 6 17
565 421.51 temperature 10.0 1440 > th dose independent rect. 24 7
568 421.51 temperature 30.0 1440 < th dose independent rect. 24 7
572 421.51 humidity 50.0 1440 > th dose independent rect. 24 7
577 421.51 atmosphere 995.0 1440 > th dose independent rect. 24 7
578 421.51 radiation 40.0 1440 < th dose independent rect. 24 7
582 421.51 temperature 10.0 1440 > th dose independent rect. 7 17
585 421.51 precipitation 0.1 270 < th dose independent rect. 15 20
588 421.51 precipitation 0.1 270 < th dose dependent rect. 15 20
590 421.52 precipitation 0.1 1440 < th dose independent rect. 18 17
594 421.52 precipitation 0.1 1440 < th dose dependent rect. 18 17
615 421.58 precipitation 0.1 30 < th dose independent rect. 6 7
621 421.58 precipitation 0.1 30 < th dose dependent rect. 6 7
632 421.62 wind 9.0 30 < th dose independent rect. 13 17
653 421.67 wind 1.0 43200 < th dose independent rect. 19 11
676 421.72 temperature 10.0 30 > th dose independent rect. 6 7
678 421.72 atmosphere 995.0 30 > th dose independent rect. 6 7
679 421.72 atmosphere 1015.0 30 < th dose independent rect. 6 7
680 421.72 temperature 10.0 30 > th dose independent rect. 13 17
693 421.75 wind 1.0 270 > th dose dependent rect. 1 2
697 421.77 atmosphere 995.0 10 > th dose dependent rect. 4 9
708 421.80 temperature 15.0 270 > th dose independent rect. 9 8
712 421.81 precipitation 0.1 1440 < th dose independent rect. 18 12
715 421.81 precipitation 0.1 1440 < th dose dependent rect. 18 12
717 421.82 precipitation 0.1 270 < th dose independent rect. 16 6
724 421.82 precipitation 0.1 270 < th dose dependent rect. 16 6
755 421.92 precipitation 0.1 720 > th dose dependent sin 9 NA
763 421.96 radiation 1.0 720 < th dose independent rect. 6 11
767 421.96 atmosphere 995.0 270 > th dose dependent rect. 3 7
789 422.04 atmosphere 995.0 270 > th dose independent rect. 22 18
817 422.07 temperature 25.0 270 < th dose independent rect. 4 11
827 422.09 precipitation 0.1 1440 < th dose independent rect. 18 10
830 422.09 precipitation 0.1 1440 < th dose dependent rect. 18 10
851 422.13 wind 3.0 10 > th dose dependent rect. 3 1
865 422.18 atmosphere 1000.0 10 > th dose independent rect. 13 15
873 422.20 wind 1.0 43200 > th dose dependent rect. 22 6
893 422.28 atmosphere 1005.0 10 < th dose independent rect. 4 2
922 422.33 atmosphere 995.0 270 > th dose independent rect. 23 16
933 422.36 temperature 15.0 10 > th dose dependent rect. 10 9
942 422.39 wind 9.0 270 < th dose independent rect. 9 8
949 422.40 wind 1.0 90 > th dose independent rect. 6 17
953 422.41 wind 1.0 43200 > th dose dependent rect. 22 8
976 422.45 precipitation 0.1 270 < th dose independent rect. 3 8
978 422.45 precipitation 0.1 270 < th dose dependent rect. 3 8
979 422.46 wind 7.0 270 < th dose independent rect. 10 6
989 422.47 temperature 25.0 270 < th dose dependent rect. 5 12
997 422.49 radiation 10.0 30 < th dose independent rect. 23 9