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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0171000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.01 (0.0444) R2 : 0.836
β1 : 1.11 (0.163) R2dD : 0.0182 R2D : 0.0286
β2 : 0.867 (0.134) R2dC : 0.0231 R2C : 0.158
β3 : 4.04 (0.124) R2dE : 0.594 R2E : 0.739
β4 : 4.89 (0.431) R2dD*C : 0.0503 R2D*C : 0.0546
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.235 (0.0946) R2dN8 : 0.00326 R2N8 : -0.000985
σ : 0.829
deviance : 316.67
__
_____
C
peak time of C : 9.61
E
wheather : temperature
threshold : 15.3
memory length : 287
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.2
open length of G : 15.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.5 0.833 6 1.14 1.34 3.68 6.69 -2.02 0.267 8.61 15.3 295 19.8 15.8
316.67 0.829 6.01 1.11 0.867 4.04 4.89 -- 0.235 9.61 15.3 287 20.2 15.3
369.02 0.895 5.96 1.23 0.619 4.08 -- 3.41 0.351 5.12 15.7 280 21 15.2
405.82 0.938 6.01 1.24 0.817 3.94 -- -- 0.25 8.12 15.83 289 20.4 15.3
374.21 0.901 5.99 1.22 -- 4.44 -- 3.21 0.344 -- 15.64 267 21 15.1
532.69 1.08 5.92 1.41 4.91 -- 4.6 -- 0.172 7.03 -- -- -- --
584.82 1.13 5.93 1.49 4.94 -- -- -- 0.156 6.85 -- -- -- --
408.3 0.941 6.03 1.24 -- 4.59 -- -- 0.282 -- 15.47 304 20.6 15.1
445.94 0.984 6.03 -- 0.732 4.05 -- -- 0.142 7.76 16 295 20.4 15.3
1861.22 2.02 6.03 1.59 -- -- -- -- 0.251 -- -- -- -- --
643.01 1.19 5.96 -- 4.95 -- -- -- -0.00904 6.84 -- -- -- --
446.89 0.985 6.06 -- -- 4.61 -- -- 0.138 -- 16.32 303 20.6 15
1928.14 2.05 6.07 -- -- -- -- -- 0.0741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 322.27 temperature 15.0 270 > th dose independent rect. 20 16
11 349.16 wind 7.0 270 < th dose independent rect. 21 15
13 350.90 temperature 15.0 270 > th dose independent rect. 18 8
16 354.22 temperature 10.0 270 > th dose dependent rect. 20 15
19 358.82 temperature 10.0 270 > th dose dependent rect. 7 6
24 361.18 temperature 20.0 270 > th dose independent rect. 7 6
27 361.63 precipitation 0.1 270 < th dose independent rect. 21 15
28 361.63 precipitation 0.1 270 < th dose dependent rect. 21 15
32 363.15 temperature 10.0 270 > th dose independent rect. 12 9
34 363.15 atmosphere 995.0 270 > th dose independent rect. 21 15
37 363.58 radiation 1.0 270 < th dose dependent rect. 16 10
39 363.99 temperature 10.0 270 > th dose dependent rect. 19 17
44 364.87 humidity 50.0 270 > th dose independent rect. 21 15
45 364.88 wind 9.0 270 < th dose independent rect. 12 9
46 364.95 wind 1.0 270 > th dose independent rect. 18 8
47 365.05 temperature 10.0 90 > th dose dependent rect. 9 5
51 365.45 radiation 1.0 270 > th dose independent rect. 7 6
56 365.87 atmosphere 1015.0 270 < th dose independent rect. 12 8
62 366.60 wind 1.0 270 > th dose independent rect. 12 8
63 366.62 precipitation 0.1 270 < th dose independent rect. 12 9
64 366.62 precipitation 0.1 270 < th dose dependent rect. 12 9
65 366.69 radiation 1.0 270 < th dose independent rect. 17 9
71 366.91 humidity 50.0 270 > th dose independent rect. 18 8
72 366.91 radiation 20.0 270 < th dose independent rect. 18 8
75 366.91 temperature 10.0 270 > th dose independent rect. 2 16
76 366.91 atmosphere 1015.0 270 < th dose independent rect. 2 16
82 367.01 atmosphere 995.0 270 > th dose independent rect. 18 8
83 367.03 radiation 40.0 270 < th dose dependent rect. 18 8
84 367.04 wind 9.0 270 < th dose independent rect. 18 8
105 368.83 temperature 10.0 270 > th dose dependent rect. 9 2
113 369.14 wind 7.0 270 < th dose independent rect. 7 6
117 369.40 precipitation 0.1 270 < th dose independent rect. 18 8
118 369.40 precipitation 0.1 270 < th dose dependent rect. 18 8
125 370.23 temperature 20.0 270 > th dose independent rect. 9 2
128 370.40 temperature 20.0 90 > th dose independent rect. 9 5
129 370.41 precipitation 0.1 270 < th dose independent rect. 7 6
130 370.41 precipitation 0.1 270 < th dose dependent rect. 7 6
134 370.66 humidity 90.0 90 < th dose independent rect. 9 5
136 370.91 atmosphere 995.0 270 > th dose independent rect. 7 6
137 370.91 atmosphere 1015.0 270 < th dose independent rect. 7 6
138 370.91 temperature 10.0 270 > th dose independent rect. 13 18
140 371.15 wind 9.0 270 < th dose independent rect. 2 16
147 371.36 wind 9.0 270 < th dose independent rect. 13 18
148 371.45 temperature 30.0 270 < th dose independent rect. 18 8
192 372.78 precipitation 0.1 270 < th dose independent rect. 2 16
193 372.78 precipitation 0.1 270 < th dose dependent rect. 2 16
195 373.08 wind 7.0 10 < th dose independent rect. 22 16
196 373.11 temperature 10.0 10 > th dose dependent rect. 22 16
219 374.23 humidity 50.0 270 > th dose independent rect. 7 6
257 375.52 atmosphere 995.0 270 > th dose independent rect. 2 16
259 375.63 wind 1.0 270 > th dose independent rect. 7 6
260 375.81 temperature 15.0 270 > th dose independent rect. 8 17
261 375.87 atmosphere 995.0 270 > th dose independent rect. 12 8
268 376.24 radiation 40.0 270 < th dose independent rect. 14 17
284 376.80 temperature 10.0 10 > th dose dependent rect. 9 5
301 377.71 radiation 1.0 90 > th dose independent rect. 9 5
304 377.75 precipitation 0.1 90 < th dose independent rect. 9 5
305 377.75 precipitation 0.1 90 < th dose dependent rect. 9 5
315 378.40 radiation 1.0 270 > th dose independent rect. 9 2
316 378.42 radiation 40.0 90 < th dose independent rect. 13 8
324 378.73 precipitation 0.1 270 < th dose independent rect. 13 18
325 378.73 precipitation 0.1 270 < th dose dependent rect. 13 18
330 379.00 wind 9.0 90 < th dose independent rect. 9 5
340 379.27 atmosphere 995.0 90 > th dose independent rect. 9 5
341 379.27 atmosphere 1015.0 90 < th dose independent rect. 9 5
351 379.58 wind 7.0 270 < th dose independent rect. 9 2
358 379.81 temperature 15.0 10 > th dose independent rect. 22 16
393 380.63 precipitation 0.1 270 < th dose independent rect. 9 2
394 380.63 precipitation 0.1 270 < th dose dependent rect. 9 2
417 380.94 atmosphere 995.0 270 > th dose independent rect. 9 2
418 380.94 atmosphere 1015.0 270 < th dose independent rect. 9 2
419 380.94 temperature 10.0 270 > th dose independent rect. 11 22
425 381.22 humidity 50.0 270 > th dose independent rect. 9 2
459 381.75 atmosphere 1015.0 270 < th dose independent rect. 21 15
470 382.10 radiation 40.0 10 < th dose dependent rect. 14 20
472 382.20 temperature 10.0 270 > th dose dependent rect. 19 7
483 382.85 wind 1.0 270 > th dose independent rect. 9 2
484 382.85 radiation 1.0 270 < th dose dependent sin 15 NA
489 382.93 atmosphere 995.0 270 > th dose independent rect. 13 18
492 383.04 wind 9.0 270 < th dose independent rect. 11 22
494 383.13 radiation 1.0 270 > th dose independent rect. 18 20
583 384.98 wind 9.0 270 < th dose dependent rect. 7 6
674 387.40 temperature 20.0 10 > th dose independent rect. 9 5
675 387.42 radiation 40.0 10 < th dose independent rect. 12 10
679 387.48 wind 1.0 270 > th dose independent rect. 2 17
704 388.18 humidity 50.0 270 > th dose independent rect. 12 7
707 388.28 humidity 90.0 270 < th dose independent rect. 19 17
741 389.03 wind 9.0 270 < th dose dependent rect. 9 2
746 389.23 radiation 40.0 10 < th dose independent rect. 14 20
775 389.84 atmosphere 1015.0 270 < th dose independent rect. 19 7
797 390.59 radiation 1.0 270 < th dose independent sin 15 NA
811 390.79 humidity 50.0 270 > th dose independent rect. 14 17
815 391.07 temperature 10.0 43200 > th dose independent rect. 10 5
903 392.84 radiation 1.0 270 > th dose independent sin 3 NA
923 393.13 radiation 1.0 270 > th dose independent rect. 11 20
925 393.17 humidity 50.0 270 > th dose dependent rect. 1 16
967 393.73 wind 1.0 10 > th dose independent rect. 14 7
969 393.77 precipitation 0.1 10 < th dose independent rect. 14 7
970 393.77 precipitation 0.1 10 < th dose dependent rect. 14 7
984 394.02 temperature 10.0 10 > th dose independent rect. 14 7
986 394.02 atmosphere 1010.0 10 < th dose independent rect. 14 7
989 394.02 atmosphere 995.0 10 > th dose independent rect. 21 17
998 394.20 precipitation 0.1 10 < th dose independent rect. 21 17
999 394.20 precipitation 0.1 10 < th dose dependent rect. 21 17