Os05g0170900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate/phosphate translocator.
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Os05g0170900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoenolpyruvate/phosphate translocator.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.08 | 0.611 | 12.1 | -2.65 | 9.43 | 5.25 | 4.35 | -0.114 | -0.631 | 9.82 | 1.066 | 275 | 9.11 | -- |
| 169.04 | 0.606 | 12.1 | -2.65 | 9.42 | 5.27 | 4.44 | -- | -0.631 | 9.83 | 1.067 | 277 | 9.11 | -- |
| 186.16 | 0.635 | 12 | -2.27 | 9.33 | 5.14 | -- | -3.55 | -0.518 | 9.64 | 0.11 | 288 | 10 | -- |
| 236.81 | 0.717 | 12.1 | -2.34 | 9.14 | 5.03 | -- | -- | -0.599 | 9.63 | 0.1 | 299 | 10.1 | -- |
| 363.84 | 0.888 | 12.3 | -2.2 | -- | 9.33 | -- | -0.415 | -0.308 | -- | 1.321 | 1027 | 8.21 | -- |
| 362.59 | 0.893 | 12.2 | -2.86 | 6.85 | -- | 5.13 | -- | -0.822 | 7.69 | -- | -- | -- | -- |
| 436.44 | 0.978 | 12.2 | -2.73 | 6.86 | -- | -- | -- | -0.831 | 7.62 | -- | -- | -- | -- |
| 351.43 | 0.873 | 12.3 | -2.23 | -- | 9.12 | -- | -- | -0.507 | -- | 1.433 | 1022 | 8 | -- |
| 387.16 | 0.916 | 12.1 | -- | 8.93 | 4.72 | -- | -- | -0.467 | 9.44 | 0.00995 | 299 | 10.5 | -- |
| 2963.81 | 2.54 | 12.4 | -2.64 | -- | -- | -- | -- | -0.728 | -- | -- | -- | -- | -- |
| 633.45 | 1.18 | 12.1 | -- | 6.84 | -- | -- | -- | -0.527 | 7.65 | -- | -- | -- | -- |
| 462.37 | 1 | 12.2 | -- | -- | 9.4 | -- | -- | -0.183 | -- | 0.009999 | 1011 | 8.03 | -- |
| 3147.52 | 2.62 | 12.3 | -- | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 5 | 163.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 6 | 167.77 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 7 | 169.36 | radiation | 1.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 13 | 172.49 | radiation | 1.0 | 270 | > th | dose independent | sin | 15 | NA |
| 16 | 173.59 | radiation | 1.0 | 270 | < th | dose independent | sin | 15 | NA |
| 21 | 174.38 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 28 | 175.73 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 30 | 175.89 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 58 | 178.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 72 | 181.31 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 78 | 182.75 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 90 | 184.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 92 | 185.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 104 | 186.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 105 | 186.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 107 | 186.40 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 109 | 186.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 110 | 186.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 111 | 186.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 6 |
| 112 | 186.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 123 | 188.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 18 |
| 124 | 188.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 127 | 188.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 176 | 194.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 214 | 197.97 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 231 | 198.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 234 | 198.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 235 | 198.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 236 | 198.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 246 | 199.60 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 247 | 199.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 248 | 199.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 250 | 199.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 251 | 199.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 269 | 200.59 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 272 | 200.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 273 | 200.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 275 | 200.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 332 | 202.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 341 | 202.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 343 | 202.80 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 346 | 202.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 347 | 202.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 348 | 202.84 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 357 | 202.88 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 361 | 203.01 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 366 | 203.10 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 373 | 203.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 380 | 204.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 5 |
| 381 | 204.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 388 | 204.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 389 | 204.35 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 390 | 204.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 391 | 204.36 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 406 | 204.63 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 411 | 204.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 419 | 205.08 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 7 |
| 432 | 205.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 19 |
| 433 | 205.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 443 | 206.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 444 | 206.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 448 | 206.34 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 455 | 206.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 492 | 207.37 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 495 | 207.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 519 | 208.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 520 | 208.13 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 7 |
| 521 | 208.13 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 7 |
| 529 | 208.35 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 7 |
| 537 | 208.50 | wind | 9.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 549 | 208.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 553 | 208.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 554 | 208.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 574 | 209.05 | wind | 1.0 | 10 | > th | dose independent | rect. | 14 | 7 |
| 578 | 209.08 | wind | 9.0 | 10 | < th | dose independent | rect. | 14 | 7 |
| 592 | 209.57 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 7 |
| 595 | 209.57 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 14 | 7 |
| 597 | 209.57 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 17 |
| 598 | 209.57 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 17 |
| 624 | 210.25 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 629 | 210.38 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 632 | 210.38 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 639 | 210.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 648 | 210.72 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 695 | 211.69 | humidity | 90.0 | 10 | < th | dose independent | rect. | 14 | 7 |
| 721 | 212.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 737 | 212.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 809 | 214.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 828 | 214.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 846 | 214.86 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 856 | 215.00 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 7 |
| 867 | 215.27 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 908 | 216.04 | wind | 1.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 926 | 216.30 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 945 | 216.61 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 17 |
| 958 | 216.88 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 16 |