Os05g0170800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UvrB/UvrC protein domain containing protein.
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Os05g0170800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UvrB/UvrC protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.49 | 0.374 | 12.8 | -0.627 | 3.53 | -0.379 | 1.44 | 0.436 | 0.122 | 10.8 | 19 | 12 | -- | -- |
| 64.11 | 0.373 | 12.8 | -0.683 | 3.52 | -0.426 | 1.55 | -- | 0.116 | 10.8 | 19 | 12 | -- | -- |
| 71.08 | 0.393 | 12.8 | -0.505 | 3.53 | -0.362 | -- | 0.955 | 0.148 | 10.8 | 19.09 | 12 | -- | -- |
| 73.94 | 0.4 | 12.8 | -0.587 | 3.54 | -0.519 | -- | -- | 0.128 | 10.8 | 19.08 | 2 | -- | -- |
| 687.08 | 1.22 | 13 | -1.07 | -- | 1.16 | -- | 0.198 | -0.258 | -- | 26.38 | 11 | -- | -- |
| 69.57 | 0.391 | 12.8 | -0.811 | 3.46 | -- | 1.69 | -- | 0.0483 | 10.8 | -- | -- | -- | -- |
| 81.58 | 0.423 | 12.8 | -0.743 | 3.45 | -- | -- | -- | 0.0533 | 10.8 | -- | -- | -- | -- |
| 687.05 | 1.22 | 13 | -1.11 | -- | 1.17 | -- | -- | -0.27 | -- | 26.39 | 11 | -- | -- |
| 82.16 | 0.422 | 12.8 | -- | 3.56 | -0.686 | -- | -- | 0.207 | 10.9 | 18.99 | 2 | -- | -- |
| 818.4 | 1.34 | 12.9 | -0.813 | -- | -- | -- | -- | 0.0324 | -- | -- | -- | -- | -- |
| 96.11 | 0.459 | 12.8 | -- | 3.46 | -- | -- | -- | 0.136 | 10.8 | -- | -- | -- | -- |
| 718.88 | 1.25 | 12.9 | -- | -- | 1.09 | -- | -- | -0.13 | -- | 26.37 | 11 | -- | -- |
| 835.81 | 1.35 | 12.9 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.92 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 14 |
| 2 | 56.21 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 15 |
| 8 | 56.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 20 | 57.14 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 17 |
| 52 | 57.88 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 58 | 57.95 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 13 |
| 77 | 58.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 82 | 58.23 | temperature | 25 | 270 | < th | dose dependent | sin | 16 | NA |
| 87 | 58.27 | temperature | 25 | 90 | < th | dose dependent | sin | 14 | NA |
| 121 | 58.62 | temperature | 20 | 10 | > th | dose independent | sin | 14 | NA |
| 146 | 58.76 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 165 | 58.92 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 188 | 59.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 14 | 14 |
| 190 | 59.11 | temperature | 20 | 90 | < th | dose independent | sin | 13 | NA |
| 196 | 59.14 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 12 |
| 206 | 59.19 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 12 |
| 250 | 59.43 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 14 |
| 278 | 59.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 285 | 59.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 314 | 59.64 | wind | 1 | 270 | < th | dose independent | rect. | 24 | 1 |
| 377 | 59.81 | wind | 1 | 270 | < th | dose independent | rect. | 16 | 9 |
| 380 | 59.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 420 | 59.93 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 421 | 59.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 553 | 60.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 636 | 60.44 | wind | 3 | 720 | < th | dose independent | rect. | 13 | 5 |
| 647 | 60.46 | temperature | 10 | 90 | > th | dose dependent | sin | 14 | NA |
| 653 | 60.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 667 | 60.51 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 5 |
| 687 | 60.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 688 | 60.56 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 7 |
| 692 | 60.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 734 | 60.66 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 1 |
| 748 | 60.68 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 5 |
| 789 | 60.75 | wind | 5 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 806 | 60.79 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 8 |
| 947 | 60.96 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 972 | 60.98 | wind | 3 | 720 | < th | dose independent | rect. | 14 | 1 |
| 989 | 60.99 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 8 |