Os05g0170700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os05g0170700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.15 | 0.86 | 3.29 | 0.187 | 0.494 | -0.803 | 0.352 | -0.676 | -0.268 | 7.03 | 90.43 | 328 | -- | -- |
| 335.82 | 0.853 | 3.29 | 0.147 | 0.496 | -0.795 | 0.208 | -- | -0.292 | 7.13 | 90.16 | 326 | -- | -- |
| 335.37 | 0.853 | 3.28 | 0.183 | 0.486 | -0.773 | -- | -0.458 | -0.267 | 7.13 | 90.18 | 327 | -- | -- |
| 335.73 | 0.853 | 3.28 | 0.163 | 0.482 | -0.788 | -- | -- | -0.272 | 7.16 | 90.22 | 326 | -- | -- |
| 344.22 | 0.864 | 3.28 | 0.148 | -- | -0.439 | -- | -0.459 | -0.212 | -- | 90.98 | 323 | -- | -- |
| 346.04 | 0.872 | 3.26 | 0.0886 | 0.23 | -- | -0.0749 | -- | -0.15 | 9.56 | -- | -- | -- | -- |
| 346.06 | 0.871 | 3.26 | 0.086 | 0.23 | -- | -- | -- | -0.15 | 9.63 | -- | -- | -- | -- |
| 344.39 | 0.864 | 3.28 | 0.131 | -- | -0.444 | -- | -- | -0.211 | -- | 91 | 275 | -- | -- |
| 336.42 | 0.854 | 3.28 | -- | 0.472 | -0.771 | -- | -- | -0.286 | 7.19 | 90.39 | 326 | -- | -- |
| 349.18 | 0.873 | 3.27 | 0.0841 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 346.25 | 0.87 | 3.26 | -- | 0.23 | -- | -- | -- | -0.159 | 9.6 | -- | -- | -- | -- |
| 344.84 | 0.865 | 3.28 | -- | -- | -0.428 | -- | -- | -0.222 | -- | 91 | 275 | -- | -- |
| 349.37 | 0.872 | 3.27 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 325.33 | wind | 5.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 2 | 325.51 | wind | 5.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 3 | 325.68 | wind | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 6 | 326.70 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 8 | 327.22 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 10 | 327.34 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 2 |
| 12 | 327.45 | wind | 3.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 14 | 327.49 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 20 | 327.62 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 2 |
| 25 | 327.62 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 164 | 330.56 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 19 |
| 166 | 330.56 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 169 | 330.65 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 170 | 330.66 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 17 |
| 171 | 330.66 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 172 | 330.67 | humidity | 80.0 | 10 | > th | dose independent | rect. | 14 | 4 |
| 173 | 330.68 | humidity | 80.0 | 90 | > th | dose independent | rect. | 15 | 2 |
| 190 | 330.93 | humidity | 80.0 | 90 | > th | dose independent | rect. | 14 | 4 |
| 191 | 330.97 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 1 | NA |
| 192 | 331.02 | precipitation | 0.1 | 10 | > th | dose independent | sin | 1 | NA |
| 193 | 331.05 | precipitation | 0.1 | 10 | < th | dose independent | sin | 1 | NA |
| 194 | 331.05 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 1 | NA |
| 197 | 331.16 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 4 |
| 202 | 331.20 | radiation | 30.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 203 | 331.21 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 2 | 4 |
| 216 | 331.36 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 2 | 9 |
| 226 | 331.59 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 277 | 331.76 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 8 | 2 |
| 282 | 331.90 | wind | 1.0 | 90 | > th | dose independent | rect. | 20 | 10 |
| 288 | 332.10 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 295 | 332.14 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 7 |
| 310 | 332.23 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 320 | 332.42 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 14 | 4 |
| 338 | 332.58 | wind | 5.0 | 90 | < th | dose dependent | rect. | 1 | 9 |
| 339 | 332.59 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 343 | 332.63 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 9 | 1 |
| 344 | 332.63 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 7 | 3 |
| 352 | 332.75 | radiation | 30.0 | 270 | < th | dose independent | rect. | 20 | 20 |
| 388 | 333.04 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 21 |
| 398 | 333.13 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 4 |
| 417 | 333.28 | radiation | 20.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 424 | 333.34 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 7 | 5 |
| 448 | 333.49 | precipitation | 0.1 | 90 | > th | dose independent | sin | 7 | NA |
| 449 | 333.50 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 450 | 333.50 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 451 | 333.51 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 496 | 333.76 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 8 | NA |
| 516 | 333.90 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 2 |
| 530 | 333.97 | radiation | 20.0 | 720 | < th | dose independent | rect. | 20 | 14 |
| 545 | 334.05 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 546 | 334.05 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 565 | 334.14 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 566 | 334.15 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 14 | 2 |
| 567 | 334.15 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 569 | 334.16 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 573 | 334.18 | humidity | 90.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 582 | 334.22 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 608 | 334.31 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 6 | 14 |
| 611 | 334.31 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 638 | 334.39 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 645 | 334.39 | humidity | 90.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 652 | 334.42 | humidity | 60.0 | 270 | > th | dose independent | rect. | 12 | 13 |
| 659 | 334.43 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 663 | 334.46 | precipitation | 0.1 | 90 | < th | dose independent | sin | 8 | NA |
| 666 | 334.46 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 8 | NA |
| 674 | 334.50 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 2 | 8 |
| 696 | 334.56 | humidity | 50.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 701 | 334.57 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 719 | 334.60 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 20 | 20 |
| 765 | 334.70 | wind | 5.0 | 90 | < th | dose independent | rect. | 1 | 8 |
| 788 | 334.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 20 |
| 792 | 334.77 | temperature | 30.0 | 90 | < th | dose independent | rect. | 10 | 15 |
| 798 | 334.79 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 10 | 6 |
| 820 | 334.83 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 828 | 334.85 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 877 | 334.96 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 924 | 335.09 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 928 | 335.09 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 19 |
| 929 | 335.10 | atmosphere | 1010.0 | 720 | > th | dose independent | sin | 3 | NA |
| 949 | 335.13 | precipitation | 0.1 | 90 | < th | dose independent | sin | 5 | NA |
| 952 | 335.13 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 5 | NA |
| 961 | 335.16 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 964 | 335.17 | radiation | 20.0 | 270 | < th | dose independent | rect. | 5 | 11 |