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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0170600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0452) R2 : 0.000358
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0385 (0.0952) R2dN8 : 0.000463 R2N8 : 0.000358
σ : 0.852
deviance : 333.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
321.6 0.843 3 0.252 0.0902 -0.484 0.685 -0.0769 0.144 17.1 25.2 793 -- --
321.62 0.835 3 0.255 0.0902 -0.48 0.672 -- 0.143 17 25.2 793 -- --
322.29 0.836 2.99 0.324 0.0622 -0.593 -- 0.256 0.148 17.4 25.88 930 -- --
322.37 0.836 3 0.288 0.0524 -0.538 -- -- 0.15 17.9 25.73 916 -- --
322.2 0.836 2.99 0.366 -- -0.548 -- 0.363 0.153 -- 25.8 916 -- --
330.38 0.852 3.03 0.121 0.18 -- 0.221 -- -0.0232 12.1 -- -- -- --
330.55 0.851 3.03 0.129 0.182 -- -- -- -0.0229 11.4 -- -- -- --
322.51 0.836 3 0.286 -- -0.53 -- -- 0.144 -- 25.74 916 -- --
324.42 0.839 3.01 -- 0.0402 -0.471 -- -- 0.0959 16.9 25.7 916 -- --
332.62 0.852 3.03 0.124 -- -- -- -- -0.0247 -- -- -- -- --
330.98 0.851 3.03 -- 0.181 -- -- -- -0.0372 11.4 -- -- -- --
324.51 0.839 3.01 -- -- -0.471 -- -- 0.0953 -- 25.7 916 -- --
333.03 0.852 3.04 -- -- -- -- -- -0.0385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.18 wind 1.0 30 < th dose independent rect. 22 2
5 313.68 wind 1.0 30 < th dose independent rect. 13 11
11 313.75 humidity 60.0 30 > th dose dependent rect. 12 1
23 314.40 humidity 60.0 30 > th dose independent rect. 12 1
25 314.96 wind 1.0 30 < th dose independent rect. 9 15
30 315.07 radiation 1.0 90 > th dose independent rect. 4 1
40 315.07 radiation 1.0 90 > th dose dependent rect. 4 1
50 315.15 wind 5.0 30 < th dose independent rect. 12 1
51 315.15 wind 1.0 30 < th dose independent rect. 14 2
53 315.15 wind 1.0 30 < th dose dependent rect. 14 2
55 315.17 atmosphere 1005.0 30 > th dose independent rect. 12 1
61 315.30 temperature 10.0 1440 > th dose independent rect. 13 1
65 315.30 atmosphere 995.0 1440 > th dose independent rect. 13 1
68 315.30 temperature 10.0 1440 > th dose independent rect. 14 23
71 315.30 atmosphere 1000.0 30 > th dose dependent rect. 12 1
72 315.32 wind 1.0 30 > th dose dependent rect. 12 1
75 315.36 wind 9.0 30 < th dose independent rect. 13 23
77 315.52 wind 1.0 30 > th dose independent rect. 12 1
79 315.55 temperature 30.0 30 < th dose independent rect. 12 1
82 315.61 wind 9.0 30 < th dose independent rect. 12 1
83 315.61 temperature 10.0 30 > th dose independent rect. 12 1
86 315.61 atmosphere 1015.0 30 < th dose independent rect. 12 1
87 315.61 radiation 1.0 30 > th dose independent rect. 12 1
88 315.61 precipitation 0.1 30 < th dose independent rect. 12 1
89 315.61 temperature 10.0 30 > th dose independent rect. 13 23
90 315.61 precipitation 0.1 30 < th dose dependent rect. 12 1
92 315.63 humidity 90.0 30 < th dose independent rect. 12 1
97 315.86 radiation 30.0 90 > th dose independent rect. 12 1
98 315.91 temperature 10.0 30 > th dose dependent rect. 12 1
106 316.05 radiation 20.0 30 > th dose dependent rect. 12 1
109 316.08 wind 9.0 30 < th dose dependent rect. 12 1
110 316.08 radiation 1.0 30 > th dose dependent rect. 12 1
114 316.13 temperature 10.0 30 > th dose dependent rect. 13 23
115 316.21 temperature 20.0 90 < th dose independent rect. 8 11
122 316.42 atmosphere 1015.0 30 < th dose dependent rect. 12 1
124 316.45 wind 1.0 30 > th dose independent sin 18 NA
125 316.46 temperature 20.0 90 < th dose independent rect. 12 7
127 316.47 temperature 20.0 90 < th dose dependent rect. 12 7
128 316.50 wind 7.0 10 > th dose dependent rect. 19 8
132 316.54 temperature 20.0 90 < th dose independent rect. 15 4
139 316.62 temperature 20.0 90 < th dose independent rect. 17 2
140 316.62 temperature 20.0 90 < th dose dependent rect. 17 2
145 316.64 wind 7.0 10 > th dose independent rect. 19 8
151 316.69 wind 5.0 10 > th dose dependent rect. 20 1
153 316.70 wind 7.0 10 > th dose independent rect. 19 3
158 316.70 wind 7.0 10 > th dose dependent rect. 19 3
173 316.75 wind 7.0 10 > th dose independent rect. 19 1
215 317.09 humidity 90.0 30 < th dose dependent rect. 12 1
219 317.19 wind 1.0 30 < th dose independent rect. 6 18
226 317.31 wind 1.0 30 < th dose dependent rect. 9 15
231 317.37 wind 1.0 30 < th dose independent sin 18 NA
275 317.76 wind 1.0 30 < th dose dependent rect. 13 11
283 317.93 precipitation 0.1 720 > th dose dependent rect. 17 1
287 317.96 wind 1.0 30 > th dose independent rect. 13 23
290 318.01 wind 1.0 30 < th dose independent rect. 6 21
298 318.07 temperature 20.0 30 < th dose dependent rect. 9 11
301 318.11 radiation 40.0 10 < th dose independent rect. 10 13
363 318.64 radiation 10.0 10 < th dose dependent rect. 12 1
387 318.94 temperature 30.0 30 < th dose dependent rect. 12 1
388 318.95 humidity 90.0 270 > th dose dependent rect. 21 1
446 319.22 temperature 25.0 270 < th dose independent rect. 19 5
449 319.26 temperature 20.0 270 > th dose dependent rect. 16 17
450 319.27 radiation 40.0 10 < th dose independent rect. 24 23
452 319.28 wind 5.0 30 < th dose dependent rect. 23 1
462 319.33 temperature 20.0 30 > th dose dependent rect. 16 20
464 319.35 temperature 20.0 270 > th dose independent sin 20 NA
468 319.42 wind 1.0 30 < th dose dependent rect. 22 2
477 319.52 radiation 10.0 10 < th dose independent rect. 12 1
491 319.59 humidity 90.0 270 > th dose dependent rect. 20 3
494 319.62 precipitation 0.1 30 < th dose independent rect. 13 23
496 319.62 precipitation 0.1 30 < th dose dependent rect. 13 23
497 319.63 temperature 15.0 720 > th dose dependent rect. 24 1
527 319.80 humidity 50.0 90 > th dose independent sin 13 NA
573 319.92 radiation 40.0 10 < th dose independent sin 14 NA
576 319.93 temperature 20.0 90 > th dose independent rect. 16 13
584 319.97 humidity 50.0 90 < th dose dependent sin 13 NA
585 319.98 temperature 25.0 90 < th dose independent rect. 22 3
586 319.99 temperature 25.0 90 < th dose independent rect. 22 1
589 320.00 humidity 50.0 90 < th dose independent sin 13 NA
597 320.04 radiation 40.0 10 > th dose independent sin 14 NA
598 320.05 radiation 40.0 10 < th dose independent rect. 3 20
615 320.10 radiation 40.0 10 < th dose independent rect. 10 23
662 320.17 temperature 20.0 30 < th dose independent rect. 11 18
666 320.18 wind 1.0 720 < th dose independent rect. 20 4
675 320.20 wind 1.0 30 < th dose dependent sin 18 NA
678 320.22 temperature 20.0 30 < th dose independent rect. 13 16
681 320.23 humidity 50.0 30 < th dose independent rect. 14 4
720 320.26 temperature 20.0 30 < th dose independent rect. 15 14
731 320.27 atmosphere 1015.0 720 < th dose dependent rect. 24 1
733 320.28 humidity 50.0 30 < th dose independent rect. 14 2
745 320.29 temperature 20.0 30 < th dose independent rect. 17 12
759 320.30 temperature 20.0 30 < th dose independent rect. 19 10
803 320.37 humidity 50.0 90 < th dose dependent rect. 14 4
821 320.38 humidity 50.0 30 < th dose dependent rect. 14 2
842 320.41 radiation 30.0 43200 < th dose independent rect. 17 7
844 320.42 temperature 20.0 30 > th dose independent sin 17 NA
918 320.48 humidity 60.0 10 > th dose independent rect. 23 15
947 320.53 temperature 25.0 30 < th dose independent rect. 22 5