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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0170300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.046) R2 : 0.685
β1 : 1.24 (0.168) R2dD : 0.0393 R2D : 0.0342
β2 : 3.53 (0.116) R2dC : 0.673 R2C : 0.598
β3 : -1.04 (0.142) R2dE : 0.0389 R2E : -0.0252
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.344 (0.0982) R2dN8 : 0.0114 R2N8 : -0.000469
σ : 0.857
deviance : 338.67
__
_____
C
peak time of C : 21.2
E
wheather : radiation
threshold : 25.32
memory length : 212
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.63 0.865 4.9 1.24 3.53 -1.04 -0.0336 -0.113 0.344 21.2 25.3 212 -- --
338.66 0.857 4.9 1.24 3.52 -1.04 -0.0514 -- 0.345 21.2 25.33 212 -- --
338.63 0.857 4.9 1.24 3.53 -1.04 -- -0.127 0.344 21.2 25.31 212 -- --
338.67 0.857 4.9 1.24 3.53 -1.04 -- -- 0.344 21.2 25.32 212 -- --
461.15 1 4.85 1.75 -- -5.27 -- 2.38 0.221 -- 2.205 998 -- --
362.4 0.892 4.88 1.31 3.44 -- 0.0221 -- 0.421 20.6 -- -- -- --
362.4 0.891 4.88 1.3 3.44 -- -- -- 0.421 20.6 -- -- -- --
429.57 0.965 4.85 0.956 -- -4.81 -- -- 0.123 -- 1.56 1016 -- --
378.87 0.907 4.92 -- 3.51 -1.09 -- -- 0.232 21.2 24.33 212 -- --
1026.62 1.5 4.79 1.29 -- -- -- -- 0.389 -- -- -- -- --
407.25 0.944 4.92 -- 3.43 -- -- -- 0.275 20.6 -- -- -- --
450.94 0.989 4.88 -- -- -4.88 -- -- 0.0243 -- 1.35 1031 -- --
1070.67 1.53 4.82 -- -- -- -- -- 0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.96 wind 5.0 270 > th dose dependent rect. 4 3
2 332.16 wind 5.0 270 > th dose independent rect. 4 3
6 336.50 radiation 30.0 90 < th dose independent rect. 10 13
8 337.12 temperature 20.0 720 < th dose dependent rect. 16 2
9 337.20 radiation 30.0 90 < th dose independent rect. 8 15
11 338.60 radiation 20.0 270 < th dose independent rect. 15 21
12 338.61 radiation 10.0 90 > th dose dependent rect. 12 23
14 338.83 precipitation 0.1 270 > th dose independent rect. 24 2
15 338.83 precipitation 0.1 270 > th dose dependent rect. 24 2
16 338.99 temperature 20.0 720 < th dose independent rect. 16 1
18 339.09 radiation 30.0 270 < th dose independent rect. 13 23
19 339.14 radiation 20.0 90 > th dose dependent rect. 12 21
24 339.36 radiation 30.0 90 < th dose independent sin 19 NA
31 339.84 radiation 30.0 90 > th dose independent rect. 12 21
36 340.05 radiation 30.0 270 < th dose independent sin 0 NA
49 340.28 radiation 40.0 90 < th dose dependent rect. 8 15
50 340.28 radiation 10.0 270 > th dose dependent rect. 15 23
55 340.38 wind 5.0 90 > th dose dependent rect. 4 5
60 340.49 radiation 40.0 90 < th dose dependent rect. 10 13
66 340.56 atmosphere 1010.0 30 < th dose dependent rect. 2 1
67 340.56 radiation 40.0 270 < th dose dependent rect. 15 21
69 340.65 temperature 20.0 720 < th dose dependent rect. 12 6
72 340.78 radiation 10.0 270 > th dose dependent sin 0 NA
75 340.86 radiation 20.0 270 < th dose independent rect. 7 12
79 340.92 radiation 10.0 270 > th dose dependent rect. 6 11
95 340.93 radiation 10.0 270 > th dose dependent no NA NA
176 340.98 radiation 30.0 90 > th dose independent rect. 12 23
307 341.11 radiation 20.0 270 > th dose independent rect. 6 1
395 341.24 radiation 20.0 270 < th dose independent rect. 6 23
399 341.27 radiation 30.0 270 > th dose independent rect. 10 4
414 341.33 radiation 30.0 270 < th dose independent no NA NA
416 341.33 wind 7.0 90 > th dose dependent rect. 2 7
418 341.35 radiation 30.0 270 > th dose independent rect. 15 23
419 341.35 radiation 10.0 90 > th dose dependent rect. 12 6
468 341.40 radiation 30.0 720 < th dose independent rect. 11 1
477 341.50 wind 7.0 90 > th dose independent rect. 8 1
478 341.50 wind 7.0 90 > th dose independent rect. 4 5
482 341.51 wind 7.0 90 > th dose dependent rect. 8 1
485 341.53 radiation 20.0 270 < th dose independent rect. 5 8
488 341.53 radiation 40.0 90 < th dose dependent sin 19 NA
495 341.63 radiation 20.0 270 > th dose dependent rect. 10 4
501 341.65 wind 7.0 90 > th dose independent rect. 2 7
533 341.78 radiation 30.0 270 > th dose independent rect. 8 7
536 341.82 radiation 20.0 270 < th dose independent rect. 4 23
538 341.84 radiation 30.0 720 < th dose independent rect. 24 12
543 341.86 radiation 20.0 270 > th dose independent sin 0 NA
549 341.87 radiation 30.0 270 < th dose independent rect. 18 23
552 341.88 radiation 30.0 90 < th dose independent rect. 10 23
645 342.15 radiation 40.0 270 < th dose dependent sin 23 NA
667 342.20 radiation 20.0 720 < th dose independent rect. 8 5
670 342.22 radiation 30.0 720 < th dose dependent rect. 8 4
730 342.31 radiation 20.0 270 > th dose independent no NA NA
956 342.38 temperature 30.0 90 < th dose dependent rect. 23 11