Os05g0170200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0170200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 304.4 | 0.82 | 8.87 | 2.23 | 2.4 | -2.9 | -0.891 | 2.81 | 0.0751 | 1.18 | 25.6 | 5637 | -- | -- |
| 307.21 | 0.816 | 8.96 | 1.47 | 2.29 | -2.68 | -0.852 | -- | -0.0512 | 1.15 | 25.2 | 5746 | -- | -- |
| 307.63 | 0.817 | 8.86 | 2.27 | 2.38 | -2.89 | -- | 2.81 | 0.0829 | 1.16 | 25.7 | 5666 | -- | -- |
| 310.11 | 0.82 | 8.95 | 1.53 | 2.39 | -2.67 | -- | -- | -0.0587 | 1.14 | 25.26 | 5666 | -- | -- |
| 584.92 | 1.13 | 8.88 | 1.63 | -- | -3.93 | -- | 5.72 | -0.00251 | -- | 25.7 | 5666 | -- | -- |
| 565.22 | 1.11 | 9.02 | 0.478 | 2.21 | -- | -1.23 | -- | -0.336 | 1.07 | -- | -- | -- | -- |
| 571.5 | 1.12 | 9.01 | 0.523 | 2.21 | -- | -- | -- | -0.329 | 1.02 | -- | -- | -- | -- |
| 582.89 | 1.13 | 8.93 | 1.07 | -- | -3.51 | -- | -- | -0.08 | -- | 25.26 | 5666 | -- | -- |
| 363.57 | 0.888 | 8.96 | -- | 2.31 | -2.22 | -- | -- | -0.26 | 1.23 | 26.38 | 5766 | -- | -- |
| 874.55 | 1.38 | 8.98 | 0.606 | -- | -- | -- | -- | -0.286 | -- | -- | -- | -- | -- |
| 578.71 | 1.13 | 9.03 | -- | 2.22 | -- | -- | -- | -0.387 | 1.03 | -- | -- | -- | -- |
| 612.51 | 1.16 | 8.96 | -- | -- | -3.35 | -- | -- | -0.205 | -- | 25.26 | 5666 | -- | -- |
| 884.23 | 1.39 | 8.99 | -- | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.01 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 2 | 282.18 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 3 | 287.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 4 | 288.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 5 | 289.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 6 | 289.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 7 | 289.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 11 | 291.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 13 | 291.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 16 | 292.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 43 | 292.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 49 | 293.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 51 | 293.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 53 | 293.31 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 69 | 293.88 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 90 | 294.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 91 | 294.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 93 | 294.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 96 | 294.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 100 | 294.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 108 | 294.52 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 235 | 295.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 238 | 295.97 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 255 | 296.32 | temperature | 30 | 14400 | < th | dose independent | sin | 15 | NA |
| 261 | 296.43 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 273 | 296.54 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 299 | 296.83 | temperature | 30 | 14400 | > th | dose independent | sin | 15 | NA |
| 312 | 297.01 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 321 | 297.08 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 377 | 297.65 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 379 | 297.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 396 | 297.87 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 417 | 298.15 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 419 | 298.17 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 450 | 298.32 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 587 | 299.39 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 625 | 299.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 633 | 299.95 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 642 | 300.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 652 | 300.14 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 656 | 300.18 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 688 | 300.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 716 | 300.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 719 | 300.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 722 | 300.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 731 | 300.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 809 | 301.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 810 | 301.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 19 |
| 826 | 301.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 15 |
| 839 | 301.79 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 858 | 301.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 890 | 301.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 927 | 301.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 16 |