Os05g0165800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0165800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.5 | 0.403 | 11 | -0.429 | 1.16 | -0.374 | -0.332 | -1.54 | 0.207 | 4.06 | 49.91 | 4522 | -- | -- |
| 74.08 | 0.401 | 10.9 | -0.338 | 1.18 | -0.737 | -0.289 | -- | 0.185 | 4.03 | 48.03 | 4405 | -- | -- |
| 73.79 | 0.4 | 11 | -0.432 | 1.16 | -0.391 | -- | -1.72 | 0.206 | 4.07 | 50 | 4563 | -- | -- |
| 74.29 | 0.401 | 10.9 | -0.314 | 1.17 | -0.741 | -- | -- | 0.202 | 4.05 | 48 | 4402 | -- | -- |
| 144.66 | 0.56 | 11 | -0.367 | -- | -0.168 | -- | -2.09 | 0.254 | -- | 44 | 5010 | -- | -- |
| 83.34 | 0.428 | 10.9 | -0.61 | 1.15 | -- | -0.344 | -- | 0.252 | 4.1 | -- | -- | -- | -- |
| 83.67 | 0.428 | 10.9 | -0.606 | 1.15 | -- | -- | -- | 0.254 | 4.12 | -- | -- | -- | -- |
| 144.68 | 0.56 | 10.9 | -0.275 | -- | -0.985 | -- | -- | 0.271 | -- | 44.32 | 5017 | -- | -- |
| 76.56 | 0.408 | 10.9 | -- | 1.13 | -0.812 | -- | -- | 0.199 | 4.06 | 48 | 4386 | -- | -- |
| 155.83 | 0.583 | 10.9 | -0.559 | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
| 93.35 | 0.452 | 10.9 | -- | 1.14 | -- | -- | -- | 0.322 | 4.13 | -- | -- | -- | -- |
| 110.1 | 0.489 | 10.9 | -- | -- | -0.856 | -- | -- | 0.367 | -- | 75.86 | 276 | -- | -- |
| 164.09 | 0.598 | 10.9 | -- | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 2 | 70.36 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 3 | 70.42 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 5 | 70.58 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 11 | 70.88 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 12 | 70.90 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 17 | 71.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 19 | 71.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 23 | 71.12 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 29 | 71.23 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 35 | 71.33 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 59 | 71.54 | radiation | 30 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 76 | 71.67 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 83 | 71.69 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 102 | 71.71 | humidity | 50 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 104 | 71.71 | humidity | 90 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 108 | 71.72 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 131 | 71.77 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 142 | 71.78 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 185 | 71.80 | humidity | 90 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 191 | 71.81 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 192 | 71.81 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 241 | 71.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 272 | 71.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 308 | 71.85 | radiation | 1 | 43200 | > th | dose dependent | sin | 16 | NA |
| 309 | 71.85 | radiation | 40 | 43200 | < th | dose dependent | sin | 16 | NA |
| 310 | 71.85 | radiation | 10 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 312 | 71.85 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 378 | 71.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 380 | 71.87 | radiation | 30 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 495 | 71.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 663 | 71.95 | radiation | 30 | 43200 | < th | dose independent | sin | 16 | NA |
| 669 | 71.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 934 | 72.04 | radiation | 40 | 43200 | > th | dose independent | sin | 16 | NA |
| 954 | 72.04 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 6 | 1 |