Os05g0164200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os05g0164200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.69 | 0.677 | 9.79 | -2.73 | 1.56 | 0.595 | -1.21 | -3.51 | -0.485 | 1.8 | 1 | 1570 | -- | -- |
| 219.43 | 0.69 | 9.88 | -2.84 | 1.54 | 0.532 | -1.56 | -- | -0.341 | 1.79 | 6.407 | 4517 | -- | -- |
| 213.23 | 0.68 | 9.79 | -2.68 | 1.56 | 0.612 | -- | -3.4 | -0.495 | 1.89 | 1.013 | 1617 | -- | -- |
| 221.78 | 0.694 | 9.85 | -2.65 | 1.61 | 0.87 | -- | -- | -0.351 | 1.59 | 6.689 | 4425 | -- | -- |
| 336.67 | 0.855 | 9.72 | -2.63 | -- | 0.889 | -- | -3.85 | -0.245 | -- | 2.896 | 881 | -- | -- |
| 229.62 | 0.71 | 9.86 | -2.98 | 1.58 | -- | -1.36 | -- | -0.378 | 1.57 | -- | -- | -- | -- |
| 236.93 | 0.721 | 9.85 | -2.94 | 1.58 | -- | -- | -- | -0.371 | 1.69 | -- | -- | -- | -- |
| 351.54 | 0.877 | 9.83 | -3.12 | -- | -0.642 | -- | -- | -0.331 | -- | 2.896 | 881 | -- | -- |
| 259.73 | 0.751 | 9.77 | -- | 1.5 | 2.52 | -- | -- | 0.201 | 2.57 | 7.4 | 32815 | -- | -- |
| 389.37 | 0.922 | 9.83 | -2.87 | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
| 464.13 | 1.01 | 9.78 | -- | 1.53 | -- | -- | -- | -0.0444 | 1.63 | -- | -- | -- | -- |
| 402.6 | 0.935 | 9.7 | -- | -- | 2.5 | -- | -- | 0.257 | -- | 7.411 | 32707 | -- | -- |
| 606.93 | 1.15 | 9.76 | -- | -- | -- | -- | -- | -0.0175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.48 | wind | 7 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 8 | 200.22 | wind | 7 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 9 | 200.23 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 11 | 200.61 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 15 | 200.71 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 18 | 200.92 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 19 | 200.97 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 22 | 201.25 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 23 | 201.35 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 27 | 201.61 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 34 | 201.76 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 36 | 201.84 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 49 | 202.16 | wind | 7 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 58 | 202.29 | wind | 9 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 62 | 202.37 | wind | 5 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 73 | 202.51 | wind | 9 | 14400 | < th | dose independent | sin | 6 | NA |
| 75 | 202.60 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 92 | 202.92 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 97 | 203.07 | wind | 9 | 14400 | > th | dose independent | sin | 6 | NA |
| 110 | 203.51 | wind | 3 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 113 | 203.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 115 | 203.74 | wind | 3 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 117 | 203.80 | wind | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 139 | 204.10 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 171 | 204.65 | humidity | 50 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 184 | 204.77 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 7 |
| 192 | 204.90 | wind | 9 | 14400 | > th | dose dependent | sin | 6 | NA |
| 196 | 204.96 | wind | 3 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 198 | 204.99 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 220 | 205.25 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 235 | 205.54 | radiation | 1 | 270 | > th | dose independent | rect. | 9 | 21 |
| 238 | 205.58 | humidity | 80 | 30 | < th | dose independent | rect. | 12 | 18 |
| 250 | 205.77 | humidity | 50 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 255 | 205.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 266 | 205.95 | radiation | 1 | 270 | > th | dose independent | rect. | 9 | 9 |
| 272 | 206.06 | humidity | 50 | 30 | > th | dose dependent | rect. | 6 | 18 |
| 278 | 206.13 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 280 | 206.14 | humidity | 80 | 270 | < th | dose independent | rect. | 11 | 7 |
| 282 | 206.16 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 297 | 206.20 | humidity | 90 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 301 | 206.22 | humidity | 80 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 305 | 206.25 | humidity | 60 | 30 | > th | dose independent | rect. | 6 | 18 |
| 309 | 206.27 | humidity | 90 | 30 | < th | dose dependent | sin | 18 | NA |
| 317 | 206.34 | wind | 1 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 333 | 206.43 | humidity | 80 | 270 | < th | dose independent | rect. | 24 | 18 |
| 339 | 206.47 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 20 |
| 354 | 206.55 | wind | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 360 | 206.57 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 21 |
| 361 | 206.58 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 9 |
| 365 | 206.61 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 7 |
| 367 | 206.61 | humidity | 90 | 10 | < th | dose dependent | sin | 14 | NA |
| 374 | 206.64 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 403 | 206.77 | wind | 3 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 411 | 206.82 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 13 | 17 |
| 442 | 206.98 | wind | 1 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 451 | 207.02 | humidity | 80 | 30 | < th | dose independent | sin | 16 | NA |
| 465 | 207.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 509 | 207.25 | wind | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 517 | 207.27 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 525 | 207.29 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 536 | 207.32 | wind | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 542 | 207.33 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 10 |
| 544 | 207.33 | humidity | 90 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 581 | 207.46 | wind | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 596 | 207.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 606 | 207.53 | humidity | 70 | 270 | > th | dose independent | rect. | 5 | 12 |
| 634 | 207.62 | humidity | 70 | 270 | > th | dose independent | rect. | 3 | 22 |
| 651 | 207.66 | humidity | 90 | 270 | < th | dose dependent | sin | 23 | NA |
| 665 | 207.69 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 18 |
| 671 | 207.70 | humidity | 50 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 684 | 207.77 | radiation | 1 | 270 | > th | dose independent | sin | 21 | NA |
| 723 | 207.89 | wind | 3 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 755 | 207.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 786 | 208.04 | humidity | 60 | 30 | > th | dose independent | rect. | 6 | 14 |
| 836 | 208.18 | wind | 3 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 855 | 208.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 889 | 208.28 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 15 |
| 929 | 208.37 | humidity | 80 | 270 | > th | dose independent | rect. | 6 | 3 |
| 944 | 208.41 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 11 |
| 948 | 208.41 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 23 |