Os05g0162000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os05g0162000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.77 | 0.662 | 6.62 | 10.2 | 0.254 | 132 | -0.62 | 395 | 0.00842 | 5.78 | 1 | 1442 | 11 | 1 |
| 278.16 | 0.783 | 3.27 | -0.44 | 0.394 | 0.213 | -1.51 | -- | -0.117 | 5.81 | 0.02948 | 1449 | 20.8 | 0.834 |
| 202.68 | 0.663 | 6.64 | 10.2 | 0.251 | 132 | -- | 397 | 0.0108 | 5.53 | 0.8218 | 1369 | 11 | 0.977 |
| 283.41 | 0.789 | 3.27 | -0.45 | 0.407 | 0.144 | -- | -- | -0.0979 | 5.76 | 78.98 | 1486 | 19.5 | 1.59 |
| 205.91 | 0.668 | 6.66 | 10.3 | -- | 133 | -- | 399 | 0.0144 | -- | 1.292 | 1393 | 11 | 1.03 |
| 278.48 | 0.782 | 3.27 | -0.441 | 0.382 | -- | -1.49 | -- | -0.101 | 5.74 | -- | -- | -- | -- |
| 283.89 | 0.789 | 3.27 | -0.45 | 0.374 | -- | -- | -- | -0.0948 | 5.53 | -- | -- | -- | -- |
| 287.3 | 0.789 | 3.28 | -0.408 | -- | 0.165 | -- | -- | -0.0843 | -- | 84.47 | 5070 | 19.5 | 1.58 |
| 288.75 | 0.796 | 3.26 | -- | 0.4 | 0.145 | -- | -- | -0.0478 | 5.81 | 78.98 | 1486 | 19.5 | 1.59 |
| 291.14 | 0.797 | 3.27 | -0.438 | -- | -- | -- | -- | -0.0858 | -- | -- | -- | -- | -- |
| 289.23 | 0.796 | 3.26 | -- | 0.366 | -- | -- | -- | -0.0447 | 5.59 | -- | -- | -- | -- |
| 288.47 | 0.791 | 3.27 | -- | -- | 0.185 | -- | -- | -0.0785 | -- | 0.1202 | 4779 | 0.0559 | 2.92 |
| 296.21 | 0.803 | 3.26 | -- | -- | -- | -- | -- | -0.0371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 201.77 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 226.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 4 | 226.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 11 | 226.80 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 61 | 233.18 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 67 | 233.52 | wind | 1.0 | 30 | < th | dose dependent | rect. | 3 | 2 |
| 72 | 234.55 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 84 | 237.17 | wind | 1.0 | 30 | < th | dose independent | rect. | 3 | 1 |
| 90 | 238.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 92 | 238.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 94 | 238.18 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 145 | 238.18 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 147 | 238.18 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 149 | 238.18 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 215 | 239.61 | wind | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 225 | 240.05 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 18 | 8 |
| 234 | 240.49 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 18 | 8 |
| 246 | 241.19 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 22 | 3 |
| 267 | 242.05 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 309 | 244.09 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 321 | 244.79 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 338 | 245.46 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 13 | NA |
| 347 | 245.98 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 13 | NA |
| 441 | 248.86 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 21 |
| 449 | 249.01 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 450 | 249.01 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 458 | 249.06 | wind | 1.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 464 | 249.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 465 | 249.16 | wind | 1.0 | 30 | < th | dose dependent | rect. | 11 | 17 |
| 484 | 249.59 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 496 | 249.69 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 530 | 250.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 551 | 250.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 602 | 251.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 617 | 251.52 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 642 | 251.83 | atmosphere | 1005.0 | 30 | < th | dose dependent | rect. | 19 | 15 |
| 694 | 252.53 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 695 | 252.54 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 709 | 252.69 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 777 | 253.46 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 794 | 253.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 810 | 253.64 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 819 | 253.76 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 835 | 253.86 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 854 | 254.06 | wind | 1.0 | 30 | < th | dose independent | rect. | 3 | 5 |