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Os05g0161100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.11 (0.0307) R2 : 0.848
β1 : 1.02 (0.112) R2dD : 0.0288 R2D : 0.0443
β2 : 4.32 (0.0885) R2dC : 0.975 R2C : 0.638
β3 : -1.44 (0.0757) R2dE : 0.144 R2E : -0.172
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.4 (0.0657) R2dN8 : 0.0173 R2N8 : 0.0212
σ : 0.572
deviance : 150.72
__
_____
C
peak time of C : 5.92
E
wheather : temperature
threshold : 31.8
memory length : 236
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.7
open length of G : 17.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.66 0.563 7.1 0.983 4.29 -1.46 1.86 -0.669 -0.389 5.92 31.64 264 14.1 18.2
145 0.561 7.11 0.993 4.29 -1.45 1.6 -- -0.406 5.93 31.6 246 14.4 18.1
150.95 0.572 7.11 1.02 4.26 -1.45 -- -0.29 -0.399 5.94 32.5 264 14.1 18.3
150.72 0.572 7.11 1.02 4.32 -1.44 -- -- -0.4 5.92 31.8 236 14.7 17.9
226.21 0.7 7.17 1.25 -- -2.94 -- -2.13 -0.316 -- 76.7 179 13.6 8.85
180.58 0.63 7.13 1.05 3.76 -- 1.29 -- -0.52 7.09 -- -- -- --
184.93 0.637 7.13 1.08 3.77 -- -- -- -0.523 7.08 -- -- -- --
173.49 0.613 7.18 1.08 -- -3.39 -- -- -0.428 -- 867.5 398 10.6 10.4
177.08 0.62 7.13 -- 4.38 -1.41 -- -- -0.491 5.9 30.41 215 14.7 18.1
932.38 1.43 7.21 1.15 -- -- -- -- -0.455 -- -- -- -- --
215.55 0.687 7.16 -- 3.78 -- -- -- -0.643 7.07 -- -- -- --
205.04 0.667 7.24 -- -- -3.43 -- -- -0.561 -- 819.8 393 10.7 10.4
967.32 1.45 7.24 -- -- -- -- -- -0.583 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.16 temperature 30.0 270 < th dose independent rect. 14 18
2 145.60 humidity 60.0 270 > th dose independent rect. 15 17
19 150.16 radiation 1.0 1440 < th dose independent rect. 10 2
20 150.16 radiation 1.0 1440 < th dose dependent rect. 10 2
27 150.84 radiation 1.0 1440 > th dose independent rect. 9 5
31 151.23 radiation 1.0 1440 > th dose independent rect. 11 4
34 151.36 temperature 30.0 90 < th dose independent rect. 15 8
44 151.73 humidity 50.0 270 > th dose independent rect. 4 15
52 152.05 radiation 10.0 4320 < th dose dependent rect. 24 5
53 152.07 radiation 1.0 30 > th dose independent rect. 10 9
78 152.50 temperature 20.0 270 > th dose independent rect. 13 10
80 152.62 temperature 30.0 270 < th dose independent rect. 13 7
90 152.82 humidity 50.0 270 > th dose independent rect. 13 9
108 152.98 radiation 1.0 1440 < th dose independent rect. 13 1
112 152.98 radiation 1.0 1440 < th dose dependent rect. 13 1
118 153.29 temperature 20.0 90 > th dose independent rect. 15 19
125 153.61 humidity 60.0 90 > th dose independent rect. 15 8
141 153.93 humidity 70.0 10 > th dose independent rect. 13 10
144 154.03 humidity 60.0 270 > th dose independent rect. 14 6
161 154.25 humidity 70.0 10 > th dose independent rect. 16 7
173 154.44 humidity 50.0 90 > th dose dependent rect. 15 19
202 154.98 radiation 1.0 1440 > th dose independent rect. 9 1
228 155.32 humidity 50.0 10 > th dose dependent rect. 16 19
238 155.53 humidity 60.0 270 > th dose independent rect. 15 4
243 155.57 humidity 70.0 14400 < th dose dependent rect. 21 1
271 156.07 humidity 60.0 14400 > th dose independent rect. 24 8
284 156.32 radiation 1.0 4320 < th dose independent rect. 24 5
313 156.91 humidity 50.0 90 > th dose dependent rect. 15 8
314 156.92 humidity 80.0 4320 > th dose independent rect. 23 1
327 157.06 humidity 50.0 10 > th dose dependent rect. 15 8
328 157.07 humidity 70.0 10 > th dose independent rect. 13 21
356 157.60 atmosphere 1015.0 270 < th dose independent rect. 13 10
383 157.95 atmosphere 1015.0 270 < th dose independent rect. 15 17
389 157.98 radiation 20.0 10 < th dose dependent rect. 7 16
405 158.07 temperature 25.0 270 < th dose independent rect. 5 2
408 158.07 temperature 30.0 270 < th dose independent rect. 3 16
411 158.09 atmosphere 1015.0 90 < th dose independent rect. 15 19
413 158.15 temperature 25.0 270 < th dose independent rect. 4 4
414 158.15 humidity 70.0 10 > th dose independent rect. 5 18
446 158.37 atmosphere 1015.0 10 < th dose independent rect. 16 18
449 158.41 radiation 30.0 270 < th dose independent rect. 14 18
465 158.55 humidity 50.0 30 > th dose dependent rect. 5 18
469 158.58 temperature 15.0 270 > th dose independent rect. 4 15
506 158.78 precipitation 0.1 30 < th dose independent rect. 10 19
508 158.78 precipitation 0.1 30 < th dose dependent rect. 10 19
525 158.85 radiation 20.0 10 < th dose dependent sin 19 NA
530 158.91 atmosphere 1015.0 270 < th dose independent rect. 13 21
531 158.92 humidity 70.0 14400 > th dose independent rect. 21 8
542 159.02 radiation 1.0 270 > th dose independent rect. 8 8
552 159.08 wind 7.0 10 < th dose independent rect. 10 19
553 159.08 temperature 20.0 1440 < th dose dependent rect. 2 2
571 159.25 wind 9.0 30 < th dose independent rect. 5 5
572 159.25 temperature 10.0 30 > th dose independent rect. 5 5
574 159.25 humidity 50.0 30 > th dose independent rect. 5 5
575 159.25 atmosphere 995.0 30 > th dose independent rect. 5 5
576 159.25 atmosphere 1015.0 30 < th dose independent rect. 5 5
577 159.25 temperature 10.0 30 > th dose independent rect. 10 19
581 159.27 precipitation 0.1 270 < th dose independent rect. 8 20
583 159.27 precipitation 0.1 270 < th dose dependent rect. 8 20
586 159.28 radiation 40.0 90 < th dose dependent rect. 13 10
589 159.30 precipitation 0.1 30 < th dose independent rect. 5 5
590 159.30 precipitation 0.1 30 < th dose dependent rect. 5 5
593 159.32 humidity 60.0 14400 < th dose independent rect. 6 1
595 159.32 humidity 60.0 14400 < th dose independent rect. 20 1
597 159.32 radiation 20.0 14400 > th dose independent rect. 17 1
650 159.32 humidity 60.0 14400 < th dose dependent rect. 6 1
654 159.32 radiation 20.0 14400 > th dose dependent rect. 17 1
713 159.38 temperature 20.0 90 > th dose independent rect. 5 18
715 159.40 temperature 30.0 270 < th dose dependent rect. 5 2
727 159.49 humidity 70.0 10 > th dose independent rect. 16 5
747 159.53 radiation 40.0 270 < th dose dependent rect. 14 18
762 159.60 radiation 20.0 4320 > th dose independent rect. 6 2
779 159.61 humidity 60.0 14400 > th dose independent rect. 7 1
780 159.61 humidity 50.0 270 > th dose dependent rect. 13 7
787 159.63 radiation 1.0 90 < th dose independent rect. 5 14
791 159.64 temperature 20.0 30 > th dose independent rect. 5 21
809 159.76 humidity 90.0 270 > th dose independent rect. 5 2
821 159.82 atmosphere 995.0 90 > th dose independent rect. 15 19
830 159.90 radiation 10.0 270 > th dose independent rect. 11 1
832 159.90 precipitation 0.1 270 > th dose dependent rect. 16 14
841 159.97 radiation 10.0 270 > th dose independent rect. 10 3
852 159.99 radiation 10.0 90 < th dose dependent sin 21 NA
854 160.00 radiation 20.0 1440 < th dose dependent rect. 11 1
877 160.11 temperature 20.0 10 > th dose independent rect. 5 23
886 160.13 radiation 10.0 30 < th dose dependent rect. 5 18
896 160.17 temperature 30.0 10 < th dose independent rect. 5 18
913 160.24 atmosphere 995.0 10 > th dose independent rect. 16 18
932 160.30 humidity 50.0 10 > th dose dependent rect. 7 16
933 160.31 wind 7.0 4320 > th dose independent rect. 17 1
935 160.31 humidity 70.0 10 > th dose independent rect. 7 16
946 160.34 wind 7.0 270 < th dose independent rect. 19 9
947 160.34 radiation 20.0 10 < th dose dependent rect. 12 11
971 160.42 atmosphere 995.0 270 > th dose independent rect. 15 17
976 160.44 wind 7.0 270 < th dose independent rect. 9 18
984 160.45 wind 7.0 270 < th dose independent rect. 8 20
996 160.50 humidity 50.0 14400 < th dose dependent rect. 9 1