Os05g0158700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsGA2ox1.
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Os05g0158700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to OsGA2ox1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.86 | 0.239 | 8.18 | -0.505 | 0.912 | 0.673 | 0.478 | 1.31 | -0.327 | 20.2 | 6.9 | 84 | -- | -- |
| 27 | 0.244 | 8.2 | -0.473 | 0.903 | 0.277 | 0.502 | -- | -0.333 | 20.3 | 6.7 | 457 | -- | -- |
| 26.5 | 0.24 | 8.18 | -0.517 | 0.91 | 0.641 | -- | 1.2 | -0.327 | 20.2 | 6.7 | 79 | -- | -- |
| 27.3 | 0.245 | 8.2 | -0.496 | 0.905 | 0.292 | -- | -- | -0.332 | 20.2 | 6.7 | 79 | -- | -- |
| 71.61 | 0.394 | 8.16 | -0.508 | -- | 0.637 | -- | 1.32 | -0.35 | -- | 7.51 | 78 | -- | -- |
| 28.09 | 0.248 | 8.19 | -0.423 | 0.892 | -- | 0.521 | -- | -0.319 | 20.4 | -- | -- | -- | -- |
| 28.95 | 0.252 | 8.19 | -0.439 | 0.891 | -- | -- | -- | -0.319 | 20.4 | -- | -- | -- | -- |
| 72.29 | 0.398 | 8.17 | -0.484 | -- | 0.201 | -- | -- | -0.338 | -- | 6.7 | 79 | -- | -- |
| 33.44 | 0.271 | 8.18 | -- | 0.902 | 0.161 | -- | -- | -0.275 | 20.2 | 6.2 | 81 | -- | -- |
| 73.13 | 0.4 | 8.17 | -0.444 | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
| 34.02 | 0.273 | 8.18 | -- | 0.893 | -- | -- | -- | -0.27 | 20.4 | -- | -- | -- | -- |
| 57.21 | 0.352 | 8.17 | -- | -- | -0.605 | -- | -- | -0.298 | -- | 2.99 | 474 | -- | -- |
| 78.32 | 0.413 | 8.16 | -- | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.49 | wind | 7.0 | 90 | > th | dose independent | rect. | 15 | 21 |
| 2 | 25.58 | wind | 5.0 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 18 | 25.92 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 20 | 25.93 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 22 | 25.94 | wind | 7.0 | 90 | < th | dose independent | no | NA | NA |
| 28 | 25.98 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 30 | 25.99 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 18 |
| 31 | 25.99 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 43 | 26.01 | wind | 7.0 | 90 | > th | dose independent | no | NA | NA |
| 44 | 26.01 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 57 | 26.01 | wind | 7.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 58 | 26.02 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 23 |
| 59 | 26.02 | wind | 7.0 | 90 | > th | dose independent | rect. | 24 | 23 |
| 66 | 26.03 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 72 | 26.05 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 16 |
| 79 | 26.06 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 91 | 26.07 | wind | 7.0 | 720 | > th | dose independent | rect. | 21 | 15 |
| 100 | 26.08 | wind | 7.0 | 90 | > th | dose independent | sin | 9 | NA |
| 121 | 26.10 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 122 | 26.10 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 9 | 7 |
| 123 | 26.10 | wind | 5.0 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 124 | 26.11 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 125 | 26.11 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 126 | 26.12 | wind | 7.0 | 10 | < th | dose independent | no | NA | NA |
| 129 | 26.13 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 143 | 26.13 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 146 | 26.13 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 147 | 26.13 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 151 | 26.13 | wind | 5.0 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 165 | 26.15 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 170 | 26.15 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 171 | 26.15 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 12 | 4 |
| 174 | 26.15 | wind | 5.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 175 | 26.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 176 | 26.16 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 194 | 26.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 195 | 26.16 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 197 | 26.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 216 | 26.17 | wind | 5.0 | 90 | > th | dose dependent | no | NA | NA |
| 217 | 26.17 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 219 | 26.17 | wind | 5.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 220 | 26.17 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 221 | 26.17 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 234 | 26.18 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 235 | 26.18 | wind | 7.0 | 720 | > th | dose independent | rect. | 9 | 2 |
| 236 | 26.18 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 259 | 26.18 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 263 | 26.18 | wind | 7.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 273 | 26.19 | radiation | 10.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 274 | 26.19 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 275 | 26.19 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 277 | 26.19 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 278 | 26.19 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 6 |
| 312 | 26.19 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 366 | 26.20 | wind | 5.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 376 | 26.21 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 11 |
| 393 | 26.21 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 406 | 26.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 410 | 26.22 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 411 | 26.22 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 427 | 26.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 1 | 11 |
| 432 | 26.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 434 | 26.23 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 455 | 26.24 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 456 | 26.24 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 457 | 26.24 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 6 |
| 473 | 26.24 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 17 |
| 506 | 26.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 518 | 26.25 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 523 | 26.25 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 559 | 26.26 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 13 |
| 633 | 26.27 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 22 |
| 636 | 26.27 | wind | 7.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 661 | 26.28 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 662 | 26.28 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 699 | 26.28 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 700 | 26.28 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 726 | 26.28 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 2 | 14 |
| 744 | 26.29 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 753 | 26.29 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 20 |
| 766 | 26.29 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 788 | 26.30 | wind | 7.0 | 10 | > th | dose independent | no | NA | NA |
| 790 | 26.30 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 816 | 26.30 | wind | 7.0 | 10 | > th | dose independent | rect. | 9 | 13 |
| 835 | 26.30 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 855 | 26.30 | wind | 7.0 | 10 | > th | dose independent | rect. | 2 | 20 |
| 896 | 26.30 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 23 |
| 932 | 26.31 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 933 | 26.31 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 942 | 26.31 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 8 |
| 988 | 26.31 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 989 | 26.31 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 2 | 1 |