Os05g0158400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os05g0158400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.56 | 0.341 | 8.57 | -0.714 | 0.641 | -0.513 | -0.261 | -3.13 | 0.0233 | 1.89 | 6.401 | 10697 | -- | -- |
| 58.94 | 0.358 | 8.44 | -0.034 | 0.654 | -0.376 | -0.206 | -- | 0.165 | 2.4 | 26.54 | 5561 | -- | -- |
| 52.77 | 0.338 | 8.57 | -0.699 | 0.644 | -0.524 | -- | -3.15 | 0.0253 | 1.94 | 5.47 | 10876 | -- | -- |
| 56.66 | 0.351 | 8.4 | 0.0434 | 0.691 | -0.424 | -- | -- | 0.373 | 2.35 | 29.3 | 16881 | -- | -- |
| 77.32 | 0.41 | 8.56 | -0.487 | -- | -0.568 | -- | -2.75 | 0.0935 | -- | -3.536 | 17641 | -- | -- |
| 62.05 | 0.369 | 8.45 | -0.182 | 0.621 | -- | -0.312 | -- | 0.142 | 1.91 | -- | -- | -- | -- |
| 62.42 | 0.37 | 8.45 | -0.172 | 0.622 | -- | -- | -- | 0.144 | 1.98 | -- | -- | -- | -- |
| 78.68 | 0.415 | 8.45 | -0.0973 | -- | -0.811 | -- | -- | 0.131 | -- | 29.3 | 16881 | -- | -- |
| 56.14 | 0.349 | 8.39 | -- | 0.649 | -0.434 | -- | -- | 0.398 | 1.89 | 30.3 | 16830 | -- | -- |
| 85.73 | 0.433 | 8.44 | -0.147 | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
| 63.21 | 0.372 | 8.44 | -- | 0.619 | -- | -- | -- | 0.163 | 1.97 | -- | -- | -- | -- |
| 78.93 | 0.415 | 8.44 | -- | -- | -0.825 | -- | -- | 0.141 | -- | 29.3 | 16881 | -- | -- |
| 86.29 | 0.434 | 8.44 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.89 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 51.00 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 3 | 51.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 4 | 51.41 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 6 | 51.66 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 14 |
| 8 | 51.70 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 22 | 51.86 | wind | 3 | 43200 | > th | dose dependent | sin | 9 | NA |
| 28 | 51.96 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 29 | 51.96 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 34 | 51.98 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 40 | 52.00 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 48 | 52.06 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 63 | 52.11 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 78 | 52.17 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 90 | 52.21 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 100 | 52.23 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 104 | 52.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 116 | 52.26 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 122 | 52.27 | wind | 5 | 43200 | < th | dose independent | sin | 10 | NA |
| 186 | 52.37 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 217 | 52.43 | wind | 5 | 43200 | > th | dose independent | sin | 10 | NA |
| 229 | 52.44 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 235 | 52.45 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 303 | 52.54 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 309 | 52.55 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 317 | 52.56 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 323 | 52.56 | wind | 9 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 341 | 52.59 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 349 | 52.60 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 355 | 52.61 | wind | 5 | 43200 | < th | dose independent | sin | 5 | NA |
| 356 | 52.61 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 357 | 52.61 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 368 | 52.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 380 | 52.63 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 390 | 52.64 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 431 | 52.68 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 432 | 52.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 433 | 52.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 444 | 52.69 | wind | 5 | 43200 | > th | dose independent | sin | 5 | NA |
| 471 | 52.71 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 482 | 52.72 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 520 | 52.74 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 13 |
| 523 | 52.75 | temperature | 20 | 14400 | > th | dose independent | sin | 14 | NA |
| 524 | 52.75 | temperature | 20 | 14400 | < th | dose independent | sin | 14 | NA |
| 605 | 52.80 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 647 | 52.82 | wind | 9 | 43200 | < th | dose dependent | sin | 8 | NA |
| 723 | 52.86 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 759 | 52.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 760 | 52.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 881 | 52.95 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 944 | 52.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 973 | 52.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 996 | 52.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |