Os05g0158200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os05g0158200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.5 | 0.255 | 11.2 | 0.556 | 0.586 | 0.522 | 0.349 | 0.0659 | 0.276 | 19.7 | 72 | 2851 | -- | -- |
| 29.48 | 0.253 | 11.2 | 0.564 | 0.585 | 0.531 | 0.348 | -- | 0.278 | 19.8 | 72 | 2838 | -- | -- |
| 29.54 | 0.253 | 11.2 | 0.534 | 0.586 | 0.554 | -- | 0.0871 | 0.278 | 19.8 | 73.33 | 2819 | -- | -- |
| 29.55 | 0.253 | 11.2 | 0.552 | 0.587 | 0.561 | -- | -- | 0.283 | 19.8 | 73.19 | 2819 | -- | -- |
| 48.17 | 0.323 | 11.2 | 0.544 | -- | 0.578 | -- | -0.0201 | 0.265 | -- | 73.99 | 2853 | -- | -- |
| 37.3 | 0.286 | 11.2 | 0.513 | 0.598 | -- | 0.333 | -- | 0.205 | 19.6 | -- | -- | -- | -- |
| 37.61 | 0.287 | 11.2 | 0.505 | 0.598 | -- | -- | -- | 0.205 | 19.6 | -- | -- | -- | -- |
| 48.14 | 0.323 | 11.2 | 0.544 | -- | 0.586 | -- | -- | 0.28 | -- | 74 | 2858 | -- | -- |
| 36.96 | 0.283 | 11.2 | -- | 0.649 | 0.598 | -- | -- | 0.257 | 19.5 | 73 | 3369 | -- | -- |
| 56.77 | 0.352 | 11.2 | 0.497 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 44.33 | 0.311 | 11.2 | -- | 0.593 | -- | -- | -- | 0.149 | 19.7 | -- | -- | -- | -- |
| 53.43 | 0.34 | 11.2 | -- | -- | 0.493 | -- | -- | 0.179 | -- | 65 | 28823 | -- | -- |
| 63.28 | 0.371 | 11.2 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.00 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 2 | 29.13 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 3 | 29.13 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 5 | 29.18 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 8 | 29.63 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 11 | 29.73 | wind | 3 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 17 | 29.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 18 | 29.96 | wind | 3 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 21 | 30.00 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 22 | 30.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 27 | 30.11 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 29 | 30.12 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 33 | 30.13 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 39 | 30.17 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 40 | 30.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 45 | 30.22 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 47 | 30.22 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 50 | 30.23 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 53 | 30.24 | humidity | 50 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 61 | 30.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 63 | 30.30 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 65 | 30.31 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 68 | 30.31 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 79 | 30.33 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 15 |
| 95 | 30.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 96 | 30.37 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 99 | 30.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 100 | 30.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 108 | 30.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 116 | 30.40 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 118 | 30.41 | humidity | 70 | 1440 | > th | dose independent | sin | 19 | NA |
| 130 | 30.42 | wind | 1 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 140 | 30.44 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 141 | 30.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 160 | 30.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 164 | 30.48 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 256 | 30.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 296 | 30.58 | humidity | 90 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 298 | 30.58 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 324 | 30.63 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 332 | 30.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 342 | 30.67 | humidity | 70 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 369 | 30.70 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 381 | 30.70 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 523 | 30.77 | wind | 1 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 539 | 30.78 | humidity | 70 | 1440 | < th | dose independent | sin | 21 | NA |
| 540 | 30.78 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 573 | 30.79 | humidity | 60 | 4320 | > th | dose dependent | rect. | 10 | 5 |
| 592 | 30.80 | wind | 5 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 622 | 30.82 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 3 |
| 641 | 30.83 | wind | 7 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 661 | 30.84 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 669 | 30.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 751 | 30.86 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 756 | 30.87 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 849 | 30.87 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 5 |
| 867 | 30.88 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 923 | 30.90 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 935 | 30.91 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 3 |