Os05g0157600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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Os05g0157600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase, trypsin-like serine and cysteine domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.44 | 0.251 | 10.8 | -0.494 | 0.91 | -0.132 | -0.459 | -4.8 | -0.0145 | 21.9 | 26.76 | 3954 | -- | -- |
| 31.7 | 0.262 | 10.6 | 0.492 | 0.895 | -0.62 | -0.616 | -- | 0.154 | 21.8 | 27.49 | 4268 | -- | -- |
| 29.24 | 0.252 | 10.8 | -0.492 | 0.915 | -0.138 | -- | -4.85 | -0.0164 | 21.9 | 26.6 | 3922 | -- | -- |
| 32.41 | 0.265 | 10.6 | 0.473 | 0.9 | -0.599 | -- | -- | 0.0685 | 21.9 | 29.7 | 2663 | -- | -- |
| 76.98 | 0.409 | 10.8 | -0.628 | -- | 0.0734 | -- | -4.89 | -0.0466 | -- | 27.26 | 2873 | -- | -- |
| 45.83 | 0.317 | 10.6 | 0.312 | 0.879 | -- | -0.591 | -- | 0.169 | 21.7 | -- | -- | -- | -- |
| 47.14 | 0.322 | 10.6 | 0.335 | 0.883 | -- | -- | -- | 0.171 | 21.7 | -- | -- | -- | -- |
| 75.3 | 0.404 | 10.5 | 0.628 | -- | -0.667 | -- | -- | 0.484 | -- | 30.9 | 13100 | -- | -- |
| 38.53 | 0.289 | 10.7 | -- | 0.923 | -0.533 | -- | -- | 0.0195 | 21.9 | 29.9 | 2629 | -- | -- |
| 93.37 | 0.452 | 10.6 | 0.343 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 50.1 | 0.331 | 10.6 | -- | 0.884 | -- | -- | -- | 0.133 | 21.7 | -- | -- | -- | -- |
| 84.55 | 0.428 | 10.6 | -- | -- | -0.492 | -- | -- | 0.0389 | -- | 29.8 | 5851 | -- | -- |
| 96.47 | 0.458 | 10.6 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 2 | 27.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 4 | 28.06 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 5 | 28.06 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 11 | 28.11 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 17 | 28.13 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 30 | 28.23 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 38 | 28.26 | temperature | 30 | 14400 | > th | dose dependent | sin | 10 | NA |
| 52 | 28.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 58 | 28.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 69 | 28.31 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 20 |
| 77 | 28.33 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 127 | 28.36 | temperature | 30 | 14400 | > th | dose dependent | sin | 15 | NA |
| 133 | 28.37 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 143 | 28.37 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 248 | 28.38 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 251 | 28.38 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 252 | 28.38 | temperature | 30 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 254 | 28.38 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 11 |
| 328 | 28.38 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 21 |
| 369 | 28.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 374 | 28.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 389 | 28.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 20 |
| 402 | 28.39 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 445 | 28.40 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 536 | 28.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 636 | 28.44 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 658 | 28.45 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 755 | 28.48 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 763 | 28.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 777 | 28.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 827 | 28.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 894 | 28.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 986 | 28.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 6 |