Os05g0157500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os05g0157500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.39 | 0.313 | 10.9 | -0.411 | 1.22 | -0.613 | -0.479 | -0.322 | 0.271 | 21.2 | 25.7 | 93 | -- | -- |
| 44.54 | 0.311 | 10.9 | -0.438 | 1.22 | -0.599 | -0.593 | -- | 0.274 | 21.2 | 25.8 | 111 | -- | -- |
| 45.18 | 0.313 | 10.9 | -0.404 | 1.22 | -0.64 | -- | -0.431 | 0.265 | 21.2 | 25.7 | 92 | -- | -- |
| 45.49 | 0.314 | 10.9 | -0.437 | 1.22 | -0.608 | -- | -- | 0.265 | 21.2 | 25.85 | 119 | -- | -- |
| 103.84 | 0.475 | 10.9 | -0.735 | -- | -1.27 | -- | 0.71 | 0.107 | -- | 30.55 | 628 | -- | -- |
| 49.57 | 0.33 | 10.8 | -0.317 | 1.2 | -- | -0.547 | -- | 0.385 | 20.8 | -- | -- | -- | -- |
| 50.57 | 0.333 | 10.8 | -0.299 | 1.2 | -- | -- | -- | 0.386 | 20.8 | -- | -- | -- | -- |
| 104.18 | 0.475 | 10.9 | -0.627 | -- | -1.27 | -- | -- | 0.129 | -- | 30.1 | 632 | -- | -- |
| 50.2 | 0.33 | 10.9 | -- | 1.22 | -0.413 | -- | -- | 0.339 | 21 | 25.77 | 116 | -- | -- |
| 132.47 | 0.538 | 10.8 | -0.301 | -- | -- | -- | -- | 0.376 | -- | -- | -- | -- | -- |
| 52.93 | 0.34 | 10.8 | -- | 1.2 | -- | -- | -- | 0.419 | 20.8 | -- | -- | -- | -- |
| 113.89 | 0.497 | 10.8 | -- | -- | -1.07 | -- | -- | 0.243 | -- | 30.5 | 619 | -- | -- |
| 134.85 | 0.542 | 10.8 | -- | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.42 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 2 | 39.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 11 |
| 3 | 39.85 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 22 |
| 4 | 39.87 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 8 | 39.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 11 |
| 19 | 40.64 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 22 | 40.75 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 27 | 40.95 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 28 | 40.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 37 | 41.15 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 39 | 41.21 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 41 | 41.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 56 | 41.38 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 57 | 41.38 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 62 | 41.44 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 64 | 41.44 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 71 | 41.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 115 | 41.74 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 127 | 41.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 163 | 42.00 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 175 | 42.08 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 257 | 42.56 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 378 | 42.95 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 14 |
| 420 | 43.07 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 421 | 43.07 | temperature | 25.0 | 270 | < th | dose independent | sin | 12 | NA |
| 442 | 43.12 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 445 | 43.13 | temperature | 25.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 450 | 43.14 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 459 | 43.15 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 488 | 43.20 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 489 | 43.20 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 491 | 43.20 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 493 | 43.20 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 515 | 43.22 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 550 | 43.27 | temperature | 20.0 | 10 | > th | dose independent | sin | 11 | NA |
| 570 | 43.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 576 | 43.30 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 581 | 43.31 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 590 | 43.32 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 595 | 43.33 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 3 |
| 622 | 43.35 | temperature | 20.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 671 | 43.40 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 756 | 43.50 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 767 | 43.52 | temperature | 20.0 | 10 | < th | dose independent | sin | 12 | NA |
| 784 | 43.53 | wind | 9.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 800 | 43.54 | wind | 3.0 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 814 | 43.56 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 12 |
| 819 | 43.56 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 885 | 43.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 954 | 43.68 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 963 | 43.69 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 3 |