Os05g0154500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Spc97/Spc98 family protein.
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Os05g0154500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Spc97/Spc98 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.88 | 0.265 | 8.67 | -0.0401 | 0.771 | 0.667 | 0.595 | -4.43 | 0.0075 | 18.2 | 26.4 | 4975 | -- | -- |
| 35.79 | 0.279 | 8.55 | 1.05 | 0.816 | 0.218 | 0.508 | -- | 0.166 | 18 | 22.61 | 2300 | -- | -- |
| 32.75 | 0.267 | 8.67 | -0.0313 | 0.778 | 0.664 | -- | -4.38 | 0.0113 | 18.2 | 26.44 | 4952 | -- | -- |
| 35.43 | 0.277 | 8.56 | 0.92 | 0.787 | 0.357 | -- | -- | 0.122 | 18.1 | 18.52 | 2109 | -- | -- |
| 63.26 | 0.37 | 8.69 | -0.398 | -- | 0.898 | -- | -5.88 | -0.0429 | -- | 26.77 | 4979 | -- | -- |
| 37.88 | 0.289 | 8.55 | 1.06 | 0.814 | -- | 0.528 | -- | 0.201 | 18.3 | -- | -- | -- | -- |
| 38.57 | 0.291 | 8.55 | 1.05 | 0.817 | -- | -- | -- | 0.203 | 18.3 | -- | -- | -- | -- |
| 64.97 | 0.377 | 8.55 | 0.917 | -- | 0.595 | -- | -- | 0.0894 | -- | 19.91 | 1997 | -- | -- |
| 41.54 | 0.3 | 8.63 | -- | 0.819 | 0.826 | -- | -- | -0.161 | 18.2 | -10.4 | 47520 | -- | -- |
| 73.17 | 0.4 | 8.53 | 1.03 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 67.87 | 0.385 | 8.57 | -- | 0.802 | -- | -- | -- | 0.0857 | 18.4 | -- | -- | -- | -- |
| 76.3 | 0.407 | 8.61 | -- | -- | 0.804 | -- | -- | -0.17 | -- | -0.5345 | 47520 | -- | -- |
| 101.29 | 0.47 | 8.56 | -- | -- | -- | -- | -- | 0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.55 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 14 | 31.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 15 | 31.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 16 | 31.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 20 | 31.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 21 | 31.91 | radiation | 20 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 54 | 32.07 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 55 | 32.07 | radiation | 10 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 59 | 32.07 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 75 | 32.08 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 84 | 32.09 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 89 | 32.10 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 90 | 32.10 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 91 | 32.10 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 93 | 32.11 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 94 | 32.11 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 100 | 32.11 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 101 | 32.11 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 103 | 32.12 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 112 | 32.12 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 116 | 32.12 | radiation | 10 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 172 | 32.12 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 178 | 32.12 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 181 | 32.13 | radiation | 10 | 43200 | < th | dose independent | sin | 16 | NA |
| 194 | 32.13 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 236 | 32.14 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 237 | 32.14 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 247 | 32.15 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 258 | 32.15 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 280 | 32.16 | radiation | 40 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 451 | 32.21 | radiation | 10 | 43200 | < th | dose dependent | sin | 9 | NA |
| 558 | 32.26 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 578 | 32.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 582 | 32.28 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 598 | 32.29 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 614 | 32.29 | radiation | 1 | 43200 | > th | dose dependent | sin | 12 | NA |
| 625 | 32.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 644 | 32.30 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 723 | 32.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 12 |
| 729 | 32.32 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 742 | 32.33 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 750 | 32.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 803 | 32.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 840 | 32.36 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 959 | 32.39 | humidity | 60 | 43200 | > th | dose independent | sin | 8 | NA |
| 970 | 32.39 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 19 |