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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0153500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0352) R2 : 0.544
β1 : -3 (0.129) R2dD : 0.563 R2D : 0.532
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.233 (0.0751) R2dN8 : 0.0128 R2N8 : -0.0185
σ : 0.66
deviance : 199.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.41 0.606 3.96 -2.91 0.508 -1.21 -1.1 -0.903 -0.105 19.5 1.009 1408 -- --
167.16 0.602 3.94 -2.8 0.513 -1.11 -1.14 -- -0.0826 19.6 1.01 1402 -- --
169.11 0.606 3.96 -2.9 0.523 -1.19 -- -0.976 -0.108 18.8 1.009 1407 -- --
169.92 0.607 3.94 -2.77 0.513 -1.09 -- -- -0.0837 18.5 1 1417 -- --
182.54 0.629 3.95 -2.89 -- -1.21 -- -0.839 -0.118 -- 1 1431 -- --
184.25 0.636 3.97 -3.01 0.489 -- -1.05 -- -0.222 19.1 -- -- -- --
185.93 0.639 3.97 -2.99 0.514 -- -- -- -0.221 18.1 -- -- -- --
182.9 0.63 3.93 -2.76 -- -1.13 -- -- -0.0945 -- 1.01 1438 -- --
361.28 0.885 3.98 -- 0.527 -1.64 -- -- 0.0628 17.9 0.6867 1451 -- --
199.64 0.66 3.96 -3 -- -- -- -- -0.233 -- -- -- -- --
421.1 0.96 3.9 -- 0.56 -- -- -- 0.112 17.8 -- -- -- --
361.78 0.886 3.8 -- -- -2.47 -- -- 0.485 -- 0.68 1446 -- --
437.35 0.976 3.89 -- -- -- -- -- 0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.46 temperature 25 720 > th dose independent rect. 20 1
3 161.54 temperature 25 720 > th dose dependent rect. 20 1
4 161.59 wind 5 90 < th dose dependent rect. 3 22
6 162.26 temperature 25 10 < th dose independent sin 10 NA
9 162.58 wind 5 30 < th dose dependent rect. 4 14
12 162.80 temperature 20 10 > th dose dependent rect. 20 11
14 162.92 temperature 25 10 < th dose independent rect. 13 20
21 163.18 wind 5 30 < th dose dependent rect. 4 12
22 163.19 radiation 20 10 < th dose dependent rect. 7 21
25 163.28 temperature 25 10 < th dose independent rect. 13 15
35 163.51 radiation 1 43200 > th dose dependent rect. 18 1
45 163.51 radiation 10 43200 < th dose dependent rect. 18 11
52 163.69 wind 5 30 < th dose dependent rect. 4 17
56 163.73 temperature 20 14400 < th dose dependent rect. 2 1
57 163.73 temperature 20 14400 < th dose dependent rect. 24 3
58 163.75 temperature 20 14400 < th dose dependent rect. 24 1
68 163.94 temperature 25 10 < th dose independent rect. 18 15
76 164.07 radiation 10 43200 < th dose dependent rect. 4 1
94 164.25 radiation 1 43200 < th dose dependent rect. 7 1
100 164.27 radiation 10 43200 < th dose dependent rect. 21 8
101 164.27 temperature 20 14400 < th dose dependent rect. 24 15
106 164.29 radiation 20 43200 > th dose dependent rect. 16 1
127 164.31 radiation 1 43200 < th dose independent rect. 7 4
130 164.32 radiation 1 43200 > th dose independent rect. 7 4
131 164.32 radiation 1 43200 < th dose independent rect. 21 8
133 164.33 wind 7 43200 > th dose independent rect. 13 1
146 164.35 radiation 40 43200 < th dose dependent rect. 18 2
151 164.37 radiation 1 43200 < th dose independent rect. 19 10
153 164.37 radiation 10 43200 < th dose dependent rect. 1 4
159 164.38 radiation 1 43200 > th dose independent rect. 7 2
160 164.38 radiation 1 43200 < th dose independent rect. 7 2
164 164.39 radiation 1 43200 > th dose independent rect. 4 1
165 164.39 radiation 1 43200 < th dose independent rect. 4 1
176 164.39 radiation 1 43200 > th dose dependent rect. 4 1
194 164.40 radiation 10 43200 < th dose independent rect. 18 12
195 164.40 radiation 40 43200 < th dose dependent rect. 18 4
200 164.41 wind 3 30 < th dose independent rect. 4 14
215 164.42 radiation 10 43200 < th dose dependent rect. 23 6
229 164.45 wind 1 43200 < th dose independent rect. 22 6
230 164.45 radiation 10 43200 < th dose independent rect. 24 6
232 164.45 wind 1 43200 < th dose independent rect. 18 11
233 164.45 temperature 20 14400 < th dose dependent sin 7 NA
259 164.49 humidity 60 43200 < th dose dependent rect. 10 1
265 164.51 radiation 10 43200 < th dose independent rect. 18 8
270 164.52 radiation 10 43200 < th dose independent rect. 18 6
275 164.53 radiation 10 43200 < th dose independent rect. 18 4
280 164.53 radiation 1 43200 < th dose dependent rect. 7 4
282 164.54 radiation 10 43200 < th dose independent rect. 18 2
317 164.57 wind 1 43200 < th dose independent rect. 20 9
372 164.67 wind 1 43200 < th dose dependent rect. 18 11
393 164.72 temperature 20 14400 < th dose dependent rect. 13 18
417 164.76 temperature 25 10 > th dose independent rect. 20 12
424 164.78 wind 3 90 < th dose independent rect. 3 22
466 164.82 radiation 1 4320 > th dose independent rect. 18 11
488 164.85 wind 7 4320 < th dose independent rect. 17 1
510 164.90 wind 7 43200 < th dose independent rect. 13 1
526 164.92 wind 3 1440 > th dose dependent rect. 14 4
527 164.92 temperature 20 90 > th dose dependent rect. 3 4
552 164.97 wind 5 1440 > th dose independent rect. 14 1
586 165.00 wind 1 43200 > th dose independent rect. 18 11
595 165.01 wind 7 4320 > th dose independent rect. 17 1
618 165.03 temperature 20 14400 < th dose dependent no NA NA
638 165.06 wind 1 43200 < th dose dependent rect. 22 7
651 165.10 radiation 1 1440 < th dose dependent rect. 3 14
653 165.11 wind 9 43200 > th dose independent rect. 14 3
657 165.12 wind 5 1440 < th dose independent rect. 13 2
659 165.13 radiation 1 14400 < th dose independent rect. 9 1
662 165.13 radiation 1 1440 < th dose dependent rect. 5 12
674 165.17 temperature 20 270 > th dose dependent rect. 3 2
684 165.19 wind 5 1440 < th dose independent rect. 13 5
691 165.20 wind 7 4320 < th dose independent rect. 15 3
694 165.20 temperature 20 14400 < th dose dependent rect. 5 23
699 165.22 wind 1 43200 > th dose independent rect. 20 9
729 165.27 wind 7 4320 > th dose independent rect. 15 3
730 165.27 radiation 30 43200 < th dose independent rect. 16 4
731 165.27 radiation 30 43200 < th dose independent rect. 16 6
734 165.27 radiation 30 43200 < th dose independent rect. 16 10
735 165.27 wind 3 1440 > th dose dependent rect. 14 1
738 165.28 radiation 30 43200 < th dose independent rect. 16 1
748 165.29 radiation 1 1440 < th dose dependent rect. 20 21
761 165.32 humidity 60 43200 < th dose independent rect. 8 3
773 165.35 wind 7 4320 > th dose independent rect. 14 5
774 165.35 wind 1 43200 < th dose dependent rect. 20 1
783 165.37 radiation 1 14400 > th dose independent rect. 9 1
784 165.37 radiation 30 43200 < th dose independent rect. 16 14
799 165.39 wind 5 10 < th dose dependent rect. 4 8
805 165.40 wind 9 43200 > th dose dependent rect. 14 3
810 165.41 radiation 1 43200 < th dose dependent rect. 10 1
815 165.43 temperature 25 10 < th dose independent rect. 18 10
833 165.48 humidity 60 14400 > th dose independent rect. 21 11
840 165.49 wind 1 43200 < th dose dependent rect. 20 9
847 165.52 temperature 20 14400 < th dose independent rect. 4 1
849 165.52 wind 9 43200 < th dose independent rect. 14 3
858 165.54 humidity 60 43200 < th dose independent rect. 5 6
869 165.56 humidity 60 43200 < th dose independent rect. 1 10
883 165.59 temperature 20 14400 > th dose independent rect. 4 1
886 165.59 humidity 60 43200 < th dose dependent rect. 3 8
892 165.60 humidity 60 43200 < th dose dependent rect. 1 10
910 165.64 humidity 90 43200 < th dose independent rect. 24 1
927 165.67 radiation 40 43200 < th dose independent rect. 15 16
961 165.71 wind 5 30 < th dose dependent rect. 4 10
964 165.72 wind 1 43200 > th dose independent rect. 22 6
997 165.77 wind 5 4320 > th dose dependent rect. 17 2