Os05g0153400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0153400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.09 | 0.581 | 7.04 | 1.97 | 3.89 | 0.912 | -0.938 | -3.37 | 0.521 | 19.3 | 74.36 | 909 | -- | -- |
| 169.51 | 0.606 | 7.05 | 1.65 | 3.91 | 0.908 | 0.296 | -- | 0.451 | 19.3 | 76.06 | 888 | -- | -- |
| 154.4 | 0.579 | 7.03 | 1.95 | 3.83 | 0.943 | -- | -3.08 | 0.526 | 19.3 | 74.39 | 984 | -- | -- |
| 169.07 | 0.606 | 7.03 | 1.63 | 3.9 | 0.837 | -- | -- | 0.492 | 19.3 | 79 | 876 | -- | -- |
| 844.03 | 1.35 | 6.94 | 1.95 | -- | 1.17 | -- | -2.93 | 0.501 | -- | 68.64 | 1343 | -- | -- |
| 180 | 0.629 | 7.05 | 1.72 | 3.64 | -- | -0.0181 | -- | 0.386 | 19 | -- | -- | -- | -- |
| 180 | 0.628 | 7.05 | 1.72 | 3.64 | -- | -- | -- | 0.385 | 19 | -- | -- | -- | -- |
| 853.23 | 1.37 | 6.98 | 1.67 | -- | -0.643 | -- | -- | 0.271 | -- | 68.64 | 1343 | -- | -- |
| 238.08 | 0.719 | 7.05 | -- | 3.82 | 1.02 | -- | -- | 0.372 | 19.3 | 85.44 | 900 | -- | -- |
| 878.74 | 1.39 | 6.97 | 1.65 | -- | -- | -- | -- | 0.319 | -- | -- | -- | -- | -- |
| 257.85 | 0.751 | 7.09 | -- | 3.62 | -- | -- | -- | 0.194 | 19.1 | -- | -- | -- | -- |
| 599.87 | 1.14 | 6.93 | -- | -- | -3.49 | -- | -- | 0.247 | -- | 59.54 | 509 | -- | -- |
| 950.25 | 1.44 | 7.01 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.55 | humidity | 90 | 30 | < th | dose independent | rect. | 19 | 14 |
| 2 | 155.63 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 14 |
| 3 | 155.82 | humidity | 90 | 30 | < th | dose independent | rect. | 17 | 16 |
| 5 | 156.12 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 7 | 156.41 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 8 | 156.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 9 | 156.43 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 1 |
| 11 | 156.44 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 12 | 156.45 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 13 | 156.46 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 15 | 156.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 26 | 156.81 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 35 | 156.96 | humidity | 80 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 50 | 157.10 | humidity | 80 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 52 | 157.12 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 69 | 157.27 | humidity | 90 | 720 | < th | dose independent | rect. | 7 | 17 |
| 85 | 157.47 | humidity | 80 | 720 | > th | dose dependent | no | NA | NA |
| 92 | 157.54 | humidity | 80 | 720 | > th | dose dependent | rect. | 2 | 19 |
| 100 | 157.66 | humidity | 70 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 103 | 157.68 | humidity | 90 | 720 | < th | dose independent | sin | 20 | NA |
| 120 | 157.81 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 18 |
| 139 | 157.94 | humidity | 90 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 141 | 157.95 | humidity | 80 | 720 | < th | dose independent | sin | 14 | NA |
| 142 | 157.96 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 13 |
| 146 | 157.97 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 153 | 158.00 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 8 |
| 170 | 158.10 | humidity | 80 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 191 | 158.23 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 197 | 158.25 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 10 |
| 198 | 158.25 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 16 |
| 204 | 158.28 | humidity | 90 | 30 | < th | dose independent | rect. | 21 | 12 |
| 227 | 158.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 262 | 158.53 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 270 | 158.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 318 | 158.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 340 | 158.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 346 | 158.95 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 374 | 159.02 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 378 | 159.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 402 | 159.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 409 | 159.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 415 | 159.16 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 419 | 159.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 429 | 159.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 471 | 159.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 498 | 159.38 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 506 | 159.40 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 14 |
| 532 | 159.46 | humidity | 50 | 720 | > th | dose dependent | sin | 10 | NA |
| 559 | 159.52 | humidity | 70 | 720 | > th | dose dependent | sin | 11 | NA |
| 585 | 159.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 632 | 159.67 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 17 |
| 668 | 159.75 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 8 |
| 692 | 159.80 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 16 |
| 696 | 159.82 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 707 | 159.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 714 | 159.86 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 727 | 159.89 | humidity | 80 | 720 | > th | dose dependent | sin | 0 | NA |
| 755 | 159.95 | humidity | 90 | 30 | < th | dose independent | sin | 9 | NA |
| 761 | 159.97 | humidity | 70 | 1440 | > th | dose dependent | sin | 22 | NA |
| 766 | 159.99 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 17 |
| 799 | 160.06 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 809 | 160.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 836 | 160.13 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 21 | 7 |
| 839 | 160.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 865 | 160.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 866 | 160.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 957 | 160.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 973 | 160.38 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 976 | 160.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 982 | 160.39 | temperature | 15 | 270 | > th | dose independent | rect. | 14 | 9 |