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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0151200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TspO/MBR-related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : -899 (--) R2 : 0.0891
β1 : 2150 (--) R2dD : 295000 R2D : -1170000
β2 : -- (--) R2dC : -- R2C : --
β3 : -416000 (--) R2dE : 4.03e+08 R2E : -4.04e+08
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 990000 (--) R2dD*E : 4.03e+08 R2D*E : -4.02e+08
γ1 : -0.225 (--) R2dN8 : 0.0122 R2N8 : -877000
σ : 0.92
deviance : 389.86
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8
open length of G : 1.22

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
383.27 0.912 -899 2150 0.171 -416000 1.25 990000 -0.23 18.2 1 11 8 0.895
139597437407.34 17400 -784 2150 16.5 -374000 9.28 -- -32.5 3.68 1 5 8 0.708
388.13 0.918 -899 2150 0.171 -416000 -- 990000 -0.23 15.6 1 11 8 0.895
113020448190.51 15700 -652 2130 52.8 -337000 -- -- -63.7 3.41 1.001 5 8.02 1.57
389.86 0.92 -899 2150 -- -416000 -- 990000 -0.225 -- 1 11 8 1.22
414.97 0.955 3.14 0.385 0.144 -- 0.997 -- -0.226 17.8 -- -- -- --
417.07 0.956 3.14 0.381 0.166 -- -- -- -0.221 16.1 -- -- -- --
91559762455.01 14100 -637 2130 -- -303000 -- -- -63.6 -- 1 5 8.02 1.56
91950149294.62 14100 -634 -- 54.4 -303000 -- -- -62.9 9.51 0.7402 32 8 1.73
418.56 0.956 3.14 0.374 -- -- -- -- -0.225 -- -- -- -- --
420.88 0.96 3.15 -- 0.158 -- -- -- -0.263 16.1 -- -- -- --
422.12 0.96 3.15 -- -- -0.352 -- -- -0.268 -- 0.5011 42 7.91 1.71
422.24 0.959 3.15 -- -- -- -- -- -0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 384.36 wind 1.0 10 < th dose independent rect. 8 1
3 384.36 wind 1.0 10 < th dose dependent rect. 8 1
5 384.86 humidity 80.0 10 < th dose independent rect. 5 1
10 384.86 humidity 80.0 10 < th dose dependent rect. 5 1
31 386.63 precipitation 0.1 270 > th dose independent rect. 17 1
32 386.96 precipitation 0.1 270 > th dose dependent rect. 17 1
34 389.85 wind 3.0 10 > th dose dependent rect. 6 1
40 391.73 wind 3.0 10 > th dose independent rect. 2 5
41 392.13 wind 3.0 10 > th dose independent rect. 4 3
44 392.83 temperature 20.0 90 < th dose independent rect. 9 4
48 393.00 temperature 20.0 90 < th dose dependent rect. 9 2
49 393.03 humidity 70.0 90 > th dose dependent rect. 9 2
50 393.21 wind 3.0 10 > th dose dependent rect. 2 5
51 393.25 humidity 80.0 10 > th dose dependent rect. 10 1
54 393.40 humidity 80.0 10 > th dose independent rect. 10 1
56 393.40 temperature 20.0 90 < th dose dependent rect. 8 4
59 393.54 wind 3.0 10 > th dose dependent rect. 4 3
60 393.56 wind 1.0 90 < th dose independent rect. 6 1
63 393.58 wind 1.0 270 < th dose dependent rect. 8 16
73 394.04 temperature 15.0 720 < th dose independent rect. 1 1
74 394.04 temperature 15.0 720 < th dose dependent rect. 1 1
93 394.83 temperature 25.0 270 < th dose dependent rect. 17 1
115 395.40 temperature 25.0 90 < th dose dependent rect. 16 5
126 395.94 wind 1.0 270 < th dose dependent rect. 21 2
130 396.21 temperature 25.0 10 < th dose dependent rect. 17 3
145 396.37 wind 1.0 270 < th dose independent rect. 22 1
147 396.37 humidity 50.0 30 > th dose dependent rect. 21 16
156 396.49 humidity 60.0 30 > th dose dependent rect. 9 4
178 396.75 temperature 25.0 10 < th dose dependent rect. 5 17
184 396.89 precipitation 0.1 10 > th dose independent rect. 17 1
212 396.89 precipitation 0.1 10 > th dose dependent rect. 17 1
248 397.15 atmosphere 1000.0 270 < th dose dependent rect. 16 1
250 397.22 humidity 70.0 90 > th dose independent rect. 9 4
251 397.23 atmosphere 1000.0 270 < th dose dependent rect. 16 3
255 397.26 temperature 25.0 10 < th dose dependent rect. 1 22
264 397.39 atmosphere 1000.0 270 < th dose independent rect. 16 1
275 397.59 humidity 80.0 10 > th dose independent rect. 17 3
278 397.68 wind 3.0 30 < th dose independent rect. 9 3
311 398.04 atmosphere 1015.0 4320 > th dose dependent rect. 14 1
320 398.16 temperature 25.0 90 < th dose dependent rect. 12 9
343 398.32 humidity 90.0 10 > th dose independent rect. 17 1
348 398.32 humidity 80.0 10 > th dose independent rect. 9 3
354 398.32 humidity 90.0 10 > th dose dependent rect. 17 1
375 398.35 precipitation 0.1 90 > th dose independent rect. 10 1
398 398.35 precipitation 0.1 90 > th dose dependent rect. 10 1
436 398.61 temperature 25.0 10 < th dose dependent rect. 8 14
456 398.78 atmosphere 1015.0 4320 < th dose independent rect. 12 1
463 398.82 humidity 80.0 90 < th dose independent rect. 1 5
467 398.84 atmosphere 1015.0 4320 > th dose independent rect. 13 1
478 398.89 temperature 15.0 720 < th dose dependent rect. 20 5
488 398.90 atmosphere 1015.0 4320 < th dose independent rect. 11 5
489 398.90 temperature 15.0 720 < th dose dependent rect. 22 3
493 398.92 atmosphere 1015.0 4320 > th dose independent rect. 11 5
499 398.94 wind 3.0 30 < th dose dependent rect. 9 3
517 399.04 humidity 90.0 90 > th dose dependent rect. 20 1
523 399.08 temperature 25.0 90 < th dose independent rect. 16 3
536 399.15 atmosphere 1015.0 4320 > th dose independent rect. 14 4
542 399.16 atmosphere 1015.0 4320 > th dose independent rect. 10 8
549 399.18 temperature 15.0 720 < th dose independent rect. 17 8
555 399.19 temperature 15.0 720 < th dose independent rect. 20 5
559 399.19 precipitation 0.1 270 > th dose dependent rect. 16 3
571 399.23 atmosphere 1005.0 90 < th dose independent rect. 20 1
576 399.23 humidity 80.0 270 < th dose dependent rect. 1 5
592 399.28 wind 1.0 10 < th dose dependent rect. 23 3
634 399.48 humidity 50.0 90 > th dose dependent rect. 8 7
679 399.66 humidity 70.0 90 > th dose independent rect. 20 16
681 399.66 atmosphere 1015.0 4320 > th dose dependent rect. 10 7
687 399.68 temperature 15.0 720 < th dose independent sin 6 NA
709 399.77 wind 1.0 10 < th dose dependent rect. 13 13
760 400.00 temperature 25.0 90 < th dose independent rect. 16 5
772 400.05 wind 1.0 270 < th dose dependent rect. 4 1
790 400.11 temperature 15.0 720 < th dose dependent sin 4 NA
801 400.14 atmosphere 1015.0 4320 < th dose independent rect. 15 5
807 400.15 humidity 50.0 270 > th dose dependent rect. 18 18
846 400.29 temperature 30.0 30 < th dose dependent rect. 17 16
864 400.37 humidity 50.0 90 > th dose dependent rect. 8 18
867 400.40 atmosphere 1000.0 30 > th dose independent rect. 13 8
882 400.48 precipitation 0.1 270 > th dose dependent rect. 10 9
900 400.56 humidity 80.0 30 > th dose independent rect. 20 11
909 400.61 radiation 10.0 43200 < th dose dependent rect. 22 6
948 400.68 precipitation 0.1 270 > th dose independent rect. 16 3
960 400.71 humidity 70.0 270 > th dose independent rect. 18 18
962 400.71 precipitation 0.1 270 > th dose dependent rect. 8 10
963 400.72 atmosphere 1005.0 10 > th dose dependent rect. 7 1
984 400.81 wind 1.0 10 < th dose independent rect. 23 1
989 400.81 wind 1.0 10 < th dose dependent rect. 23 1
993 400.82 wind 3.0 10 > th dose independent rect. 24 7
997 400.82 wind 1.0 270 < th dose dependent rect. 10 14