FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0150100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.8 (0.0409) R2 : 0.516
β1 : -0.87 (0.159) R2dD : 0.0409 R2D : 0.102
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.77 (0.136) R2dE : 0.19 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.43 (0.419) R2dD*E : 0.152 R2D*E : 0.26
γ1 : -0.144 (0.0895) R2dN8 : 0.00318 R2N8 : 0.0124
σ : 0.752
deviance : 261.01
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.5
memory length : 298
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.37
open length of G : 5.48

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.06 0.749 3.81 -0.918 0.391 1.53 -1.51 -3.98 -0.17 6.27 24.29 293 5.9 5.02
294.53 0.799 3.92 -1.41 0.196 1.83 -2.39 -- -0.516 8.71 24.1 184 6.55 4.77
257.87 0.748 3.81 -0.849 0.356 1.64 -- -4.16 -0.137 5.84 24.3 305 5.63 5.1
323.63 0.838 3.87 -1.35 0.345 1.96 -- -- -0.323 8.22 24.08 182 5.95 5.48
261.01 0.752 3.8 -0.87 -- 1.77 -- -4.43 -0.144 -- 24.5 298 5.37 5.48
338.51 0.863 3.91 -1.63 0.871 -- -4 -- -0.58 9.45 -- -- -- --
397.04 0.933 3.91 -1.78 0.887 -- -- -- -0.585 9.47 -- -- -- --
327.68 0.843 3.87 -1.32 -- 1.99 -- -- -0.288 -- 24 287 4.8 6.63
378.64 0.906 3.83 -- 0.253 2.14 -- -- -0.15 7.81 24 178 5.87 5.78
443.33 0.984 3.93 -1.79 -- -- -- -- -0.582 -- -- -- -- --
480.57 1.03 3.87 -- 0.89 -- -- -- -0.387 9.62 -- -- -- --
381.09 0.909 3.82 -- -- 2.14 -- -- -0.0912 -- 24.06 288 4.8 6.65
527.47 1.07 3.89 -- -- -- -- -- -0.384 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.55 temperature 25 270 < th dose independent rect. 6 5
2 258.80 temperature 25 270 < th dose independent rect. 5 7
6 261.17 temperature 25 270 < th dose independent rect. 7 2
17 267.52 temperature 20 720 > th dose dependent rect. 3 3
18 268.63 temperature 20 720 > th dose dependent rect. 3 1
37 273.25 temperature 30 30 < th dose dependent rect. 7 5
40 273.91 temperature 30 270 < th dose dependent rect. 5 6
43 274.46 temperature 10 720 > th dose dependent rect. 23 7
54 275.60 temperature 25 720 < th dose dependent rect. 24 5
65 276.16 temperature 25 720 < th dose dependent rect. 24 7
66 276.17 temperature 30 270 < th dose dependent rect. 7 2
71 276.42 temperature 20 720 > th dose dependent rect. 23 10
91 277.36 temperature 25 720 < th dose dependent rect. 24 3
113 278.81 temperature 20 270 > th dose dependent rect. 2 13
114 278.98 temperature 10 270 > th dose dependent rect. 1 14
135 279.89 temperature 20 720 > th dose dependent rect. 21 14
139 280.12 temperature 20 720 > th dose dependent sin 8 NA
185 281.52 temperature 20 720 > th dose independent rect. 3 2
191 281.66 temperature 25 720 < th dose dependent sin 8 NA
203 281.94 temperature 20 270 > th dose dependent sin 4 NA
333 285.17 temperature 10 720 > th dose dependent rect. 19 16
358 285.81 temperature 25 270 > th dose independent rect. 3 13
541 289.36 temperature 25 270 < th dose independent sin 2 NA
543 289.37 temperature 30 270 < th dose dependent sin 3 NA
606 290.47 humidity 90 14400 > th dose dependent rect. 23 6
628 290.76 radiation 1 10 > th dose dependent rect. 7 5
640 290.96 temperature 25 270 > th dose independent sin 2 NA
646 291.00 humidity 90 14400 > th dose dependent rect. 24 3
688 291.59 temperature 20 720 < th dose independent rect. 24 7
722 292.02 radiation 30 14400 < th dose independent rect. 4 3
749 292.26 radiation 10 720 < th dose independent rect. 21 10
806 293.00 humidity 90 14400 > th dose dependent rect. 4 2
824 293.20 radiation 10 720 < th dose independent rect. 3 4
869 293.62 temperature 20 720 < th dose independent rect. 3 3
907 293.99 temperature 30 270 < th dose dependent rect. 6 15
932 294.30 radiation 30 14400 < th dose independent rect. 2 5