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Os05g0149500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipopolysaccharide-modifying protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.64 (0.0346) R2 : 0.819
β1 : -2.61 (0.127) R2dD : 0.175 R2D : 0.114
β2 : 3.85 (0.0966) R2dC : 0.729 R2C : 0.46
β3 : -1.92 (0.103) R2dE : 0.161 R2E : -0.107
β4 : 3.74 (0.414) R2dD*C : 0.033 R2D*C : 0.0274
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.626 (0.074) R2dN8 : 0.0379 R2N8 : 0.00158
σ : 0.647
deviance : 192.92
__
_____
C
peak time of C : 5.36
E
wheather : humidity
threshold : 50.45
memory length : 290
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.48 0.652 9.64 -2.59 3.84 -1.89 3.6 0.458 -0.623 5.32 50.37 285 22 19
192.92 0.647 9.64 -2.61 3.85 -1.92 3.74 -- -0.626 5.36 50.45 290 22 19
220.38 0.691 9.66 -2.52 3.76 -1.71 -- 1.39 -0.639 5.19 48.92 261 22 19
225.26 0.699 9.65 -2.54 3.76 -1.7 -- -- -0.652 5.16 49 267 22.1 19
233.08 0.711 9.68 -2.36 -- -3.26 -- -1.25 -0.566 -- 36 933 22.8 18.5
246.19 0.736 9.69 -2.48 3.41 -- 2.37 -- -0.698 3.96 -- -- -- --
262.32 0.758 9.7 -2.51 3.42 -- -- -- -0.711 3.9 -- -- -- --
239.67 0.721 9.76 -2.5 -- -3.45 -- -- -0.66 -- 32.43 908 23.6 17.4
388.98 0.919 9.62 -- 3.58 -1.69 -- -- -0.384 5.18 43.93 258 22.2 19
905.15 1.41 9.71 -2.37 -- -- -- -- -0.62 -- -- -- -- --
428.67 0.969 9.64 -- 3.37 -- -- -- -0.431 3.91 -- -- -- --
398.07 0.929 9.66 -- -- -3.35 -- -- -0.389 -- 36 908 23.6 17.4
1053.48 1.51 9.65 -- -- -- -- -- -0.357 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.96 humidity 50.0 270 > th dose independent rect. 22 19
4 198.43 atmosphere 1015.0 270 < th dose dependent rect. 17 5
6 198.56 temperature 15.0 270 > th dose independent rect. 17 5
7 198.90 wind 9.0 270 < th dose independent rect. 22 19
9 199.62 radiation 20.0 270 < th dose independent rect. 17 5
12 199.62 temperature 10.0 270 > th dose independent rect. 22 19
15 200.38 precipitation 0.1 270 < th dose independent rect. 17 5
16 200.38 precipitation 0.1 270 < th dose dependent rect. 17 5
17 200.39 wind 1.0 270 > th dose independent rect. 17 16
18 200.57 atmosphere 995.0 270 > th dose independent rect. 17 5
19 200.63 wind 9.0 270 < th dose independent rect. 17 5
20 200.78 radiation 40.0 270 < th dose dependent rect. 17 5
23 200.98 precipitation 0.1 270 < th dose independent rect. 22 19
24 200.98 precipitation 0.1 270 < th dose dependent rect. 22 19
25 201.01 atmosphere 1015.0 270 < th dose independent rect. 22 19
30 201.65 atmosphere 995.0 270 > th dose independent rect. 22 19
32 201.81 temperature 15.0 270 > th dose independent rect. 3 9
33 201.83 humidity 50.0 270 > th dose independent rect. 17 5
35 201.90 wind 1.0 270 > th dose independent rect. 17 5
44 202.22 atmosphere 1015.0 270 < th dose independent rect. 17 5
45 202.27 temperature 15.0 10 > th dose independent rect. 19 5
51 202.75 atmosphere 1015.0 10 < th dose dependent rect. 19 5
54 202.79 wind 9.0 270 < th dose independent rect. 12 15
56 202.86 wind 7.0 270 < th dose independent rect. 3 9
72 203.65 atmosphere 1010.0 10 < th dose independent rect. 19 5
74 203.68 radiation 1.0 90 < th dose dependent rect. 16 8
75 203.70 humidity 50.0 90 > th dose independent rect. 17 7
87 204.00 precipitation 0.1 270 < th dose independent rect. 3 9
88 204.00 precipitation 0.1 270 < th dose dependent rect. 3 9
90 204.13 wind 9.0 270 < th dose dependent rect. 16 6
93 204.17 wind 9.0 10 < th dose independent rect. 24 19
107 204.37 temperature 30.0 10 < th dose independent rect. 19 5
108 204.37 humidity 50.0 10 > th dose independent rect. 19 5
110 204.37 atmosphere 995.0 10 > th dose independent rect. 19 5
111 204.37 radiation 1.0 10 < th dose independent rect. 19 5
116 204.37 temperature 10.0 10 > th dose independent rect. 24 19
117 204.37 radiation 1.0 10 < th dose dependent rect. 19 5
125 204.43 radiation 1.0 90 < th dose independent rect. 16 8
127 204.43 atmosphere 1015.0 10 < th dose independent rect. 24 19
146 204.70 wind 9.0 10 < th dose independent rect. 19 5
148 204.74 humidity 50.0 270 > th dose independent rect. 12 15
151 204.79 wind 1.0 270 > th dose independent rect. 3 9
157 204.89 atmosphere 995.0 270 > th dose independent rect. 3 9
158 204.89 atmosphere 1015.0 270 < th dose independent rect. 3 9
159 204.89 temperature 10.0 270 > th dose independent rect. 12 15
174 205.15 atmosphere 1015.0 270 < th dose dependent rect. 19 1
187 205.52 precipitation 0.1 10 < th dose independent rect. 19 5
189 205.52 precipitation 0.1 10 < th dose dependent rect. 19 5
194 205.80 radiation 1.0 10 < th dose dependent rect. 17 7
201 205.97 precipitation 0.1 270 < th dose independent rect. 12 15
202 205.97 precipitation 0.1 270 < th dose dependent rect. 12 15
259 206.67 humidity 50.0 10 > th dose independent rect. 24 19
263 206.81 radiation 20.0 270 < th dose independent rect. 17 16
283 206.95 atmosphere 995.0 10 > th dose independent rect. 24 19
297 207.17 radiation 40.0 270 < th dose dependent rect. 17 16
302 207.23 humidity 50.0 270 > th dose independent rect. 12 5
317 207.39 precipitation 0.1 10 < th dose independent rect. 24 19
319 207.39 precipitation 0.1 10 < th dose dependent rect. 24 19
353 207.66 radiation 1.0 270 < th dose dependent rect. 22 17
356 207.72 wind 1.0 10 > th dose independent rect. 19 5
360 207.80 temperature 10.0 1440 > th dose independent rect. 18 7
363 207.80 humidity 50.0 1440 > th dose independent rect. 18 7
365 207.80 radiation 20.0 1440 < th dose independent rect. 18 7
377 207.80 temperature 10.0 1440 > th dose independent rect. 1 17
394 207.88 humidity 60.0 10 > th dose independent rect. 17 7
426 208.20 humidity 50.0 270 > th dose independent rect. 9 8
429 208.25 wind 1.0 270 > th dose independent rect. 12 15
448 208.41 radiation 10.0 14400 < th dose dependent rect. 20 5
463 208.66 temperature 30.0 270 < th dose independent rect. 3 9
467 208.68 temperature 15.0 270 > th dose independent rect. 19 1
488 208.79 humidity 90.0 10 > th dose dependent rect. 24 19
498 208.88 humidity 50.0 270 > th dose independent rect. 3 9
505 208.94 temperature 25.0 30 < th dose independent rect. 24 17
509 208.99 humidity 90.0 10 > th dose dependent rect. 24 14
522 209.05 wind 9.0 270 < th dose independent rect. 20 23
533 209.15 humidity 90.0 10 > th dose dependent rect. 24 12
569 209.32 humidity 50.0 10 > th dose dependent rect. 24 17
605 209.55 wind 9.0 270 < th dose independent rect. 9 8
611 209.56 wind 1.0 270 > th dose independent rect. 9 8
614 209.57 temperature 30.0 270 < th dose independent rect. 19 1
615 209.57 humidity 50.0 270 > th dose independent rect. 19 1
616 209.57 atmosphere 995.0 270 > th dose independent rect. 19 1
617 209.57 atmosphere 1015.0 270 < th dose independent rect. 19 1
618 209.57 radiation 1.0 270 < th dose independent rect. 19 1
624 209.57 temperature 10.0 270 > th dose independent rect. 20 23
625 209.57 radiation 1.0 270 < th dose dependent rect. 19 1
642 209.64 wind 9.0 270 < th dose independent rect. 19 1
644 209.65 humidity 90.0 30 > th dose independent rect. 24 12
682 209.88 wind 7.0 90 < th dose independent rect. 5 8
693 209.96 wind 1.0 270 > th dose independent rect. 19 1
700 210.01 humidity 90.0 30 > th dose independent rect. 24 19
703 210.04 precipitation 0.1 270 < th dose independent rect. 19 1
705 210.04 precipitation 0.1 270 < th dose dependent rect. 19 1
715 210.13 humidity 50.0 270 > th dose dependent rect. 22 18
718 210.14 precipitation 0.1 270 < th dose independent rect. 17 16
719 210.14 precipitation 0.1 270 < th dose dependent rect. 17 16
745 210.20 temperature 10.0 270 > th dose independent rect. 9 8
746 210.20 atmosphere 1015.0 270 < th dose independent rect. 9 8
747 210.20 temperature 10.0 270 > th dose independent rect. 17 16
776 210.41 temperature 30.0 10 < th dose independent rect. 17 7
780 210.45 radiation 1.0 270 < th dose independent rect. 22 17
781 210.45 wind 1.0 270 < th dose dependent rect. 24 1
831 210.75 precipitation 0.1 270 < th dose independent rect. 9 8
832 210.75 humidity 90.0 10 < th dose independent rect. 19 12
833 210.75 precipitation 0.1 270 < th dose dependent rect. 9 8
854 210.85 humidity 90.0 10 > th dose dependent rect. 24 6
870 210.99 temperature 10.0 270 > th dose dependent rect. 17 5
886 211.07 wind 9.0 270 < th dose dependent rect. 19 1
896 211.10 humidity 90.0 270 < th dose dependent rect. 17 7
899 211.13 atmosphere 995.0 270 > th dose independent rect. 17 16
914 211.25 wind 7.0 10 < th dose independent rect. 19 18
935 211.39 wind 9.0 10 < th dose dependent rect. 19 5
937 211.40 wind 9.0 270 < th dose independent rect. 17 16
967 211.50 temperature 15.0 270 > th dose independent rect. 17 18
998 211.62 humidity 50.0 270 > th dose independent rect. 17 16