Os05g0149400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 1-aminocyclopropane-1-carboxylic acid oxidase.
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Os05g0149400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-aminocyclopropane-1-carboxylic acid oxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.6 | 0.706 | 13 | 0.00438 | 1.32 | -2.33 | 0.589 | 0.978 | -0.000278 | 2.77 | 22.69 | 557 | -- | -- |
| 226.31 | 0.701 | 13 | 0.125 | 1.34 | -2.57 | 0.583 | -- | 0.0271 | 2.76 | 22.31 | 514 | -- | -- |
| 226.7 | 0.701 | 13 | -0.00592 | 1.33 | -2.32 | -- | 1.02 | -0.00161 | 2.74 | 22.7 | 530 | -- | -- |
| 227.17 | 0.702 | 13 | 0.0948 | 1.35 | -2.65 | -- | -- | 0.035 | 2.76 | 22.22 | 508 | -- | -- |
| 313.49 | 0.825 | 13 | -0.00456 | -- | -2.56 | -- | 0.501 | -0.0238 | -- | 23 | 850 | -- | -- |
| 299.52 | 0.811 | 12.9 | 0.724 | 1.33 | -- | 0.444 | -- | 0.378 | 2.18 | -- | -- | -- | -- |
| 300.25 | 0.811 | 12.9 | 0.711 | 1.33 | -- | -- | -- | 0.375 | 2.17 | -- | -- | -- | -- |
| 313.67 | 0.825 | 13 | 0.0376 | -- | -2.73 | -- | -- | -0.0053 | -- | 22.66 | 854 | -- | -- |
| 227.36 | 0.702 | 13 | -- | 1.34 | -2.7 | -- | -- | 0.018 | 2.77 | 22.2 | 512 | -- | -- |
| 406.46 | 0.942 | 12.9 | 0.767 | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
| 313.57 | 0.828 | 13 | -- | 1.35 | -- | -- | -- | 0.296 | 2.18 | -- | -- | -- | -- |
| 313.7 | 0.825 | 13 | -- | -- | -2.76 | -- | -- | -0.0111 | -- | 22.64 | 854 | -- | -- |
| 421.97 | 0.959 | 12.9 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 231.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 7 | 231.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 17 | 232.02 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 19 | 232.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 24 | 232.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 38 | 232.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 52 | 233.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 58 | 233.25 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 78 | 233.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 87 | 234.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 94 | 234.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 109 | 235.15 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 116 | 235.32 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 22 |
| 148 | 235.98 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 155 | 236.19 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 182 | 236.60 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 185 | 236.66 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 21 |
| 207 | 237.05 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 22 |
| 212 | 237.12 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 269 | 237.62 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 287 | 237.73 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 288 | 237.77 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 290 | 237.80 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 301 | 237.85 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 23 |
| 466 | 239.33 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 498 | 239.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 525 | 239.98 | temperature | 20 | 720 | > th | dose independent | sin | 14 | NA |
| 593 | 240.57 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 598 | 240.61 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 669 | 241.22 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 760 | 242.08 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 13 |
| 957 | 243.46 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 8 |
| 977 | 243.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |