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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0148900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutathione-S-transferase 19E50.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0323) R2 : 0.595
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.34 (0.0929) R2dE : 0.565 R2E : 0.572
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.305 (0.0682) R2dN8 : 0.0231 R2N8 : 0.0297
σ : 0.607
deviance : 170.07
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 60.68
memory length : 214
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.72
open length of G : 6.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.86 0.583 3.6 -0.334 0.92 1.88 -0.307 -1.2 0.266 7.63 69.74 106 4.15 4.65
155.5 0.581 3.61 -0.282 0.897 1.91 -0.401 -- 0.267 7.46 69.52 119 4.17 4.42
153.79 0.578 3.61 -0.362 0.952 1.88 -- -1.27 0.259 7.64 70.45 105 4.18 4.5
156.38 0.582 3.6 -0.258 0.918 1.97 -- -- 0.267 7.57 70.87 119 4.27 4.17
168.84 0.605 3.64 -0.294 -- 2.28 -- -1.41 0.31 -- 56.24 173 3.18 5.47
224.95 0.703 3.56 -0.253 1.84 -- -0.915 -- 0.345 7.07 -- -- -- --
227.13 0.706 3.56 -0.271 1.84 -- -- -- 0.347 7.1 -- -- -- --
167.8 0.603 3.61 -0.265 -- 2.31 -- -- 0.316 -- 61.97 199 2.88 6.48
158.55 0.586 3.6 -- 0.967 1.98 -- -- 0.298 7.63 72.77 121 4.27 4.05
404.81 0.94 3.6 -0.235 -- -- -- -- 0.38 -- -- -- -- --
229.05 0.708 3.56 -- 1.83 -- -- -- 0.377 7.11 -- -- -- --
170.07 0.607 3.62 -- -- 2.34 -- -- 0.305 -- 60.68 214 2.72 6.4
406.27 0.941 3.6 -- -- -- -- -- 0.406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.46 humidity 70.0 90 > th dose dependent rect. 4 5
3 157.46 humidity 90.0 270 > th dose independent rect. 3 3
4 157.50 radiation 10.0 270 < th dose dependent rect. 3 5
5 157.65 humidity 80.0 270 > th dose dependent rect. 3 3
10 158.43 radiation 40.0 90 < th dose dependent rect. 4 5
13 158.49 radiation 20.0 90 < th dose independent rect. 4 5
16 159.22 radiation 40.0 90 < th dose dependent rect. 4 7
20 159.47 radiation 10.0 270 < th dose dependent rect. 4 2
28 160.45 humidity 70.0 270 > th dose dependent rect. 2 6
30 160.55 radiation 30.0 270 < th dose dependent rect. 2 7
32 160.76 humidity 80.0 90 > th dose independent rect. 4 5
39 161.13 radiation 1.0 270 < th dose independent rect. 4 2
52 161.75 humidity 90.0 270 > th dose independent rect. 4 1
78 163.13 wind 7.0 270 < th dose independent rect. 3 3
88 163.41 radiation 1.0 270 < th dose independent rect. 3 5
96 163.59 temperature 10.0 270 > th dose independent rect. 3 3
98 163.59 temperature 30.0 270 < th dose independent rect. 3 3
99 163.59 humidity 50.0 270 > th dose independent rect. 3 3
102 163.59 atmosphere 995.0 270 > th dose independent rect. 3 3
103 163.59 atmosphere 1015.0 270 < th dose independent rect. 3 3
107 163.59 temperature 10.0 270 > th dose independent rect. 6 21
108 163.65 radiation 20.0 270 < th dose independent rect. 2 6
111 163.69 precipitation 0.1 270 < th dose independent rect. 6 21
112 163.69 precipitation 0.1 270 < th dose dependent rect. 6 21
132 164.07 temperature 10.0 90 > th dose independent rect. 8 20
135 164.12 precipitation 0.1 270 < th dose independent rect. 3 3
136 164.12 precipitation 0.1 270 < th dose dependent rect. 3 3
153 164.89 wind 9.0 270 < th dose independent rect. 6 21
176 165.16 wind 9.0 90 < th dose dependent rect. 4 4
179 165.26 radiation 10.0 270 < th dose dependent rect. 3 9
183 165.32 humidity 80.0 270 > th dose independent rect. 2 6
185 165.37 precipitation 0.1 90 < th dose independent rect. 8 20
186 165.37 precipitation 0.1 90 < th dose dependent rect. 8 20
190 165.46 wind 9.0 90 < th dose independent rect. 8 20
199 165.78 atmosphere 995.0 90 > th dose independent rect. 8 20
236 166.94 wind 9.0 270 < th dose dependent rect. 4 2
260 167.45 radiation 1.0 270 < th dose independent rect. 3 9
264 167.49 wind 7.0 270 < th dose independent rect. 2 5
303 168.00 temperature 10.0 270 > th dose independent rect. 2 5
305 168.00 temperature 30.0 270 < th dose independent rect. 2 5
307 168.00 humidity 50.0 270 > th dose independent rect. 2 5
309 168.00 atmosphere 995.0 270 > th dose independent rect. 2 5
310 168.00 atmosphere 1015.0 270 < th dose independent rect. 2 5
314 168.03 humidity 50.0 270 > th dose independent rect. 6 21
324 168.19 atmosphere 995.0 270 > th dose independent rect. 6 21
330 168.43 precipitation 0.1 270 < th dose independent rect. 2 5
331 168.43 precipitation 0.1 270 < th dose dependent rect. 2 5
336 168.54 atmosphere 1015.0 90 < th dose independent rect. 8 20
349 168.65 temperature 10.0 270 > th dose dependent rect. 4 2
351 168.67 humidity 50.0 90 > th dose independent rect. 8 20
402 169.58 temperature 10.0 1440 > th dose independent rect. 5 5
405 169.58 atmosphere 995.0 1440 > th dose independent rect. 5 5
406 169.58 atmosphere 1015.0 1440 < th dose independent rect. 5 5
407 169.58 temperature 10.0 1440 > th dose independent rect. 10 19
417 169.80 atmosphere 995.0 90 > th dose dependent rect. 4 4
430 170.00 wind 9.0 1440 < th dose independent rect. 5 4
434 170.00 humidity 50.0 1440 > th dose independent rect. 5 4
514 171.05 wind 1.0 270 > th dose independent rect. 3 3
566 171.50 temperature 30.0 90 < th dose dependent rect. 4 4
633 172.22 radiation 40.0 10 < th dose dependent rect. 5 17
667 172.51 atmosphere 995.0 270 > th dose dependent rect. 4 2
781 173.46 wind 9.0 90 < th dose independent rect. 21 7
785 173.51 temperature 10.0 90 > th dose independent rect. 21 7
786 173.51 temperature 30.0 90 < th dose independent rect. 21 7
787 173.51 humidity 50.0 90 > th dose independent rect. 21 7
790 173.51 atmosphere 995.0 90 > th dose independent rect. 21 7
791 173.51 radiation 1.0 90 < th dose independent rect. 21 7
796 173.51 temperature 10.0 90 > th dose independent rect. 4 17
797 173.51 atmosphere 1015.0 90 < th dose independent rect. 4 17
798 173.51 radiation 1.0 90 < th dose dependent rect. 21 7
815 173.67 atmosphere 1015.0 270 < th dose independent rect. 6 21
824 173.72 precipitation 0.1 90 < th dose independent rect. 21 7
826 173.72 precipitation 0.1 90 < th dose dependent rect. 21 7
831 173.78 wind 1.0 90 > th dose independent rect. 8 20
838 173.90 wind 9.0 90 < th dose independent rect. 4 17
842 173.99 precipitation 0.1 90 < th dose independent rect. 4 17
843 173.99 precipitation 0.1 90 < th dose dependent rect. 4 17
858 174.16 wind 1.0 270 > th dose independent rect. 2 5
904 174.59 radiation 40.0 90 < th dose independent rect. 4 17
909 174.64 radiation 40.0 270 < th dose dependent rect. 15 16
917 174.74 atmosphere 1015.0 90 < th dose dependent rect. 4 4
919 174.78 atmosphere 1015.0 270 < th dose dependent rect. 4 1
927 174.89 temperature 30.0 270 < th dose dependent rect. 4 1
928 174.89 temperature 10.0 270 > th dose dependent rect. 2 5
964 175.14 radiation 20.0 30 < th dose independent rect. 5 17
969 175.17 wind 1.0 270 > th dose independent rect. 4 1