Os05g0148300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S27, mitochondrial family protein.
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Os05g0148300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S27, mitochondrial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.71 | 0.296 | 11.7 | 0.803 | 1.26 | 0.302 | 0.422 | 0.662 | 0.0702 | 21.4 | 77.96 | 304 | -- | -- |
| 41 | 0.298 | 11.7 | 0.765 | 1.2 | 0.329 | 0.427 | -- | 0.0708 | 21.3 | 77 | 399 | -- | -- |
| 40.19 | 0.295 | 11.7 | 0.794 | 1.22 | 0.323 | -- | 0.695 | 0.0671 | 21.4 | 77.04 | 382 | -- | -- |
| 41.65 | 0.301 | 11.7 | 0.751 | 1.19 | 0.355 | -- | -- | 0.0592 | 21.4 | 77.64 | 404 | -- | -- |
| 81.26 | 0.42 | 11.7 | 0.735 | -- | 1.14 | -- | -0.0232 | 0.106 | -- | 76 | 705 | -- | -- |
| 44.31 | 0.312 | 11.7 | 0.788 | 1.36 | -- | 0.45 | -- | 0.0715 | 20.6 | -- | -- | -- | -- |
| 44.98 | 0.314 | 11.7 | 0.773 | 1.36 | -- | -- | -- | 0.0714 | 20.6 | -- | -- | -- | -- |
| 79.06 | 0.414 | 11.7 | 0.654 | -- | 1.39 | -- | -- | 0.0234 | -- | 76 | 733 | -- | -- |
| 56 | 0.349 | 11.7 | -- | 1.09 | 0.455 | -- | -- | -0.0321 | 21 | 75 | 683 | -- | -- |
| 148.73 | 0.57 | 11.7 | 0.77 | -- | -- | -- | -- | 0.0597 | -- | -- | -- | -- | -- |
| 60.73 | 0.365 | 11.8 | -- | 1.35 | -- | -- | -- | -0.0147 | 20.7 | -- | -- | -- | -- |
| 89.41 | 0.44 | 11.7 | -- | -- | 1.44 | -- | -- | -0.0572 | -- | 75.49 | 744 | -- | -- |
| 164.35 | 0.598 | 11.7 | -- | -- | -- | -- | -- | -0.0257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 11 |
| 6 | 38.50 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 20 |
| 15 | 38.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 16 | 38.98 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 10 |
| 18 | 38.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 31 | 39.13 | temperature | 25 | 90 | > th | dose independent | rect. | 11 | 10 |
| 65 | 39.31 | humidity | 80 | 270 | < th | dose independent | rect. | 10 | 21 |
| 82 | 39.38 | temperature | 25 | 90 | > th | dose dependent | sin | 17 | NA |
| 143 | 39.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 4 |
| 154 | 39.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 160 | 39.62 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 20 |
| 164 | 39.62 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 188 | 39.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 192 | 39.69 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 16 |
| 193 | 39.69 | humidity | 80 | 90 | < th | dose independent | rect. | 12 | 19 |
| 202 | 39.70 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 204 | 39.71 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 217 | 39.73 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 227 | 39.77 | humidity | 80 | 10 | < th | dose independent | rect. | 12 | 19 |
| 267 | 39.84 | humidity | 50 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 282 | 39.88 | humidity | 60 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 340 | 40.00 | humidity | 70 | 90 | > th | dose independent | rect. | 7 | 22 |
| 350 | 40.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 403 | 40.08 | humidity | 80 | 270 | < th | dose independent | no | NA | NA |
| 448 | 40.14 | humidity | 80 | 270 | > th | dose independent | rect. | 5 | 22 |
| 591 | 40.26 | humidity | 90 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 592 | 40.27 | humidity | 80 | 270 | < th | dose independent | rect. | 17 | 23 |
| 610 | 40.28 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 661 | 40.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 8 |
| 702 | 40.35 | humidity | 70 | 270 | > th | dose independent | rect. | 14 | 22 |
| 721 | 40.36 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 19 |
| 793 | 40.40 | humidity | 90 | 270 | < th | dose dependent | no | NA | NA |
| 796 | 40.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 819 | 40.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 864 | 40.44 | humidity | 90 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 891 | 40.46 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 893 | 40.46 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 922 | 40.48 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 946 | 40.49 | humidity | 60 | 270 | > th | dose dependent | no | NA | NA |
| 975 | 40.50 | humidity | 90 | 270 | < th | dose dependent | rect. | 5 | 23 |